View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11515_low_5 (Length: 536)
Name: NF11515_low_5
Description: NF11515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11515_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 19 - 521
Target Start/End: Original strand, 2947914 - 2948416
Alignment:
| Q |
19 |
aggcatttcccttctttcctgcagcatgttcttaagcatcttcattgccttttttctaccctgagaagccaaaacaaattaatatttctgttttctcaat |
118 |
Q |
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| T |
2947914 |
aggcatttcccttctttcctgcagcatgttcttaagcatcttcattgccttttttctaccctgagaagccaaaacaaattaatattgctgttttctcaat |
2948013 |
T |
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| Q |
119 |
caaaatcaaaatactacactttgtctgatactttctctgtctcaaattaactgtcgtttaaagttatcacgagtgtactaatttttataattaaacgagt |
218 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2948014 |
caaaatcaagatactacactttgtctgatactttctctgtctcaaattaactgtcgtttaaagttatcacgagtgtactaatttttataattaaacgagt |
2948113 |
T |
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| Q |
219 |
ttcgtttactaaattacccatattaataaaatgcttacctgcaaacatttgttataagctgttcctggaatgttgagagggaatgagatgagtccttgta |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2948114 |
ttcgtttactaaattacccatattaataaaatgcttacctgcaaacatttgttataagctgttcctggaatgttgagagggaatgagatgagtccttgta |
2948213 |
T |
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| Q |
319 |
taaatgcaacaaagttctcccttaaattctcggaggactcggttggatcataactgatgagnnnnnnngcagtcaaatcaaatatcatctgaatgataat |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2948214 |
taaatgcaacaaagttctcccttaaattctcggaggactcggttggatcataactgatgagtttttttgcagtcaaatcaaatatcatctgaatgataat |
2948313 |
T |
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| Q |
419 |
atataggaaagaaaggtttagactttagacaaggaatggaagaaggttaaaattgcagaggaatgaaagaatagtttaaagtttgataattttaccgtct |
518 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |
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| T |
2948314 |
atataggaaagaaaggtttagactttagacaaggaatggaagaaggttaaaattgcagaggaatgaaagaatagtgtaaagtttgataattttaccgttt |
2948413 |
T |
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| Q |
519 |
ctg |
521 |
Q |
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| T |
2948414 |
ctg |
2948416 |
T |
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