View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11515_low_7 (Length: 485)
Name: NF11515_low_7
Description: NF11515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11515_low_7 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 485
Target Start/End: Original strand, 32037844 - 32038309
Alignment:
| Q |
1 |
aatagtttaggataaattctccaatccctgtagattactatttaaaaattatttgaaatatcaacatgattgaattgttctttacgagtagaagtttatg |
100 |
Q |
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|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| | |
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| T |
32037844 |
aatagtttaggataaattttccaatccctatagattactatttaaaaattatttgaaatatcaacatgattgagttgttctttacgagtaaaagtttacg |
32037943 |
T |
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| Q |
101 |
tctttttcattctcacgacttcgataatgacctaattgatgttgatttgacnnnnnnntaaggaaaaacatacatgagttacattttgaagcacatttaa |
200 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| || ||||||||||| ||||||||| |
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| T |
32037944 |
tctttttcattctcacgacttcgataataacctaattgatgttgatttgac------------aaaaa--------agatacattttgaaacacatttaa |
32038023 |
T |
|
| Q |
201 |
ttgttttatcttatagtgacattaccaaacaagatgatcataaacttctattaatattaagatggtgcatgatagaacttgtcgtagtttagtctttaac |
300 |
Q |
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||||||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32038024 |
ttgttttctcttatagtgacactaccaaacaagatgatcataaacttctactaatattaagatggtgcatgatagaacttgtcgtagtttagtctttaac |
32038123 |
T |
|
| Q |
301 |
gttaactcacttagttaaatgacacttaggacaccatgtgcatgccttgttgcatgagcaaaatcaaactacacagcgctnnnnnnntcaattaaaatta |
400 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |
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| T |
32038124 |
gttaactcactcagttaaatgacacttaggacaccatgtgcatgccttgttgcatgaacaaaatcaaactacacagcgctaaaaaaatcaattaaaatta |
32038223 |
T |
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| Q |
401 |
c-ttaaatgaagaataaatttgaaggatctattgtaatttgtatctctcttgctcctccctttcttctttgcccattttcatcttt |
485 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32038224 |
ctttaaatgaagaataaatttgaaggatctattgtaatttgtatctctcttgctcctccctttcttctttgcccattttcatcttt |
32038309 |
T |
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