View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11515_low_8 (Length: 477)
Name: NF11515_low_8
Description: NF11515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11515_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 21 - 462
Target Start/End: Original strand, 2947975 - 2948416
Alignment:
| Q |
21 |
tgagaagccaaaacaaattaatatttctgttttctcaatcaaaatcaaaatactacactttgtctgatactttctctgtctcaaattaactgtcgtttaa |
120 |
Q |
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| T |
2947975 |
tgagaagccaaaacaaattaatattgctgttttctcaatcaaaatcaagatactacactttgtctgatactttctctgtctcaaattaactgtcgtttaa |
2948074 |
T |
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| Q |
121 |
agttatcacgagtgtactaatttttataattaaacgagtttcgtttactaaattacccatattaataaaatgcttacctgcaaacatttgttataagctg |
220 |
Q |
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| T |
2948075 |
agttatcacgagtgtactaatttttataattaaacgagtttcgtttactaaattacccatattaataaaatgcttacctgcaaacatttgttataagctg |
2948174 |
T |
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| Q |
221 |
ttcctggaatgttgagagggaatgagatgagtccttgtataaatgcaacaaagttctcccttaaattctcggaggactcggttggatcataactgatgag |
320 |
Q |
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| T |
2948175 |
ttcctggaatgttgagagggaatgagatgagtccttgtataaatgcaacaaagttctcccttaaattctcggaggactcggttggatcataactgatgag |
2948274 |
T |
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| Q |
321 |
nnnnnnngcagtcaaatcaaatatcatctgaatgataatatataggaaagaaaggtttagactttagacaaggaatggaagaaggttaaaattgcagagg |
420 |
Q |
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| T |
2948275 |
tttttttgcagtcaaatcaaatatcatctgaatgataatatataggaaagaaaggtttagactttagacaaggaatggaagaaggttaaaattgcagagg |
2948374 |
T |
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| Q |
421 |
aatgaaagaatagtttaaagtttgataattttaccgtctctg |
462 |
Q |
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| T |
2948375 |
aatgaaagaatagtgtaaagtttgataattttaccgtttctg |
2948416 |
T |
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