View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11516_high_1 (Length: 700)
Name: NF11516_high_1
Description: NF11516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11516_high_1 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 563; Significance: 0; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 563; E-Value: 0
Query Start/End: Original strand, 42 - 691
Target Start/End: Original strand, 34316653 - 34317302
Alignment:
| Q |
42 |
ttacgtgtaaaggtagtttctataaaagtattgagaatgatttgtggaacatcacctcttaaagttaatatgattatgggtcatataaaaaataatgaag |
141 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
34316653 |
ttacgtgtaaaggtagtttctataaaagtattgagaatgatttgtggaacatcacctcttagagttaatatgattatgggtcatataaaaaataatgaag |
34316752 |
T |
|
| Q |
142 |
acaaaatgacaaataatatcataatttaaagagacatagagtaaagacaatattccttaccnnnnnnnnn--ccattcaattcaagaagcatcaaacata |
239 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |
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| T |
34316753 |
acaaaatgacaaataatatcataatttaaagagacatagagtaaagacaatattccttaccaaaaaaaaaaaccattcaattcaaggagcatcaaacata |
34316852 |
T |
|
| Q |
240 |
caaaataaagctacagagacata---cctaactagctatagagatttctaaaccctctacaacactaatcatcaaacaagtgattaatttcatcacacta |
336 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34316853 |
caaaataaagctacagagacataaaacctaactagctatagagatttctaaaccctctacaacactaatcatcaaacaagtgattaatttcatcacacta |
34316952 |
T |
|
| Q |
337 |
acaactaaatcttaggtaaaatccctttattcaaaccaaacatagatttaagaagcttatttcaaagttcagtgctactatccccattattattgatctt |
436 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34316953 |
acaactaaatcttaggtaaaatccctttattcaaaccaaacatagatttaaaaagcttatttcaaagttcagtgctactatccccattattattgatctt |
34317052 |
T |
|
| Q |
437 |
gcctgatttctcatcctcctcatccttgctaacaactctagaacctttgatcttaccatgtgacaacttattaaatgtcaaagtaagaactccattttcc |
536 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34317053 |
gcctgatttctcatcctcctcatccttgctaacaa-----gaacctttgatcttaccatgcgacaacttattaaatgtcaaagtaagaactccattttcc |
34317147 |
T |
|
| Q |
537 |
ttattagccttaattgaatccaaatcagcattctctggcaatcttaactgtctccagaattttccatacaccctttcaactttgtgccaacgatcacctt |
636 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
34317148 |
ttattagccttaattgaatccaaatcagcattctctggcaatcttaactgtctccagaattttccgtacaccctttcaactttgtgccaacgatcacctt |
34317247 |
T |
|
| Q |
637 |
ttttctcagcttctttcttcctttctccaataattctcagcatgccgttctctgc |
691 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34317248 |
ttttctcagcttctttcttcctttctccaataattctcagcatgccgttctctgc |
34317302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 284 - 667
Target Start/End: Complemental strand, 34314861 - 34314475
Alignment:
| Q |
284 |
ctaaaccctctacaacactaatcatcaaacaagtgattaatttcatcacactaacaactaaatcttaggtaaaatccctttattcaaaccaaacatagat |
383 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||| |
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|
| T |
34314861 |
ctaaaccctctacaacactaaccatcaaacaagtgattaatttcatcacactaacaaccaaatcctaggtgaaatccctttattcaaaccaaacatagaa |
34314762 |
T |
|
| Q |
384 |
ttaagaagcttatttcaaagttcagtgctactatccccattattattgatcttgcctgatttctcatcctcctcatccttgctaacaactctagaacctt |
483 |
Q |
| |
|
|||| |||||||||||||||||||||| || || |||||| |||||| | ||||||||||||||||| ||||| ||| |||||||||||||| || || |
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| T |
34314761 |
ttaaaaagcttatttcaaagttcagtggtattagccccatcattattaagcttgcctgatttctcattctccttatcaatgctaacaactctaatacttt |
34314662 |
T |
|
| Q |
484 |
tgatctta---ccatgtgacaacttattaaatgtcaaagtaagaactccattttccttattagccttaattgaatccaaatcagcattctctggcaatct |
580 |
Q |
| |
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| |||| | |||| |||| |||||||| ||||||| ||||||| ||||||||| |||||||| | ||||| |||||||||||||| |||||||| |
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| T |
34314661 |
taatctgatattcatgggacagcttattaagtgtcaaaataagaacaccattttccaccttagccttcacggaatcaaaatcagcattctccggcaatct |
34314562 |
T |
|
| Q |
581 |
taactgtctccagaattttccatacaccctttcaactttgtgccaacgatcaccttttttctcagcttctttcttcctttctccaat |
667 |
Q |
| |
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| ||||||||||||||||||||||| ||||||| || | ||||||||||||||||| ||||| |||||||||||||||||||||| |
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|
| T |
34314561 |
aagctgtctccagaattttccatacatcctttcagctctatgccaacgatcacctttcttctccacttctttcttcctttctccaat |
34314475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 394 - 689
Target Start/End: Original strand, 34304486 - 34304781
Alignment:
| Q |
394 |
tatttcaaagttcagtgctactatccccattattattgatcttgcctgatttctcatcctcctcatccttgctaacaactctagaacctttgatcttacc |
493 |
Q |
| |
|
|||||||||| ||| || || || |||||| ||| |||| |||| ||||||||||| ||||||||| ||||||||||||||| || ||| |||| | | |
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|
| T |
34304486 |
tatttcaaagctcattgttattagccccatcattgttgaccttgggtgatttctcattctcctcatcaatgctaacaactctagtacttttaatctgatc |
34304585 |
T |
|
| Q |
494 |
atgtgacaacttattaaatgtcaaagtaagaactccattttccttattagccttaattgaatccaaatcagcattctctggcaatcttaactgtctccag |
593 |
Q |
| |
|
||| ||||||||||||| ||||||||||||||| |||||||| | |||||||| | ||||||||||||||||| || |||||||| || || ||||| |
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|
| T |
34304586 |
atgagacaacttattaagtgtcaaagtaagaacaccattttctatcttagccttcacagaatccaaatcagcattttcaggcaatctaaattgcctccaa |
34304685 |
T |
|
| Q |
594 |
aattttccatacaccctttcaactttgtgccaacgatcaccttttttctcagcttctttcttcctttctccaataattctcagcatgccgttctct |
689 |
Q |
| |
|
||||||||||| |||||| || | ||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||| || ||||||| |
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| T |
34304686 |
aattttccatatgatctttcagctctatgccaacgatcacctttcttctccacttctttcttcctttctccaataactctcagcacgctgttctct |
34304781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 434 - 689
Target Start/End: Complemental strand, 33426545 - 33426290
Alignment:
| Q |
434 |
cttgcctgatttctcatcctcctcatccttgctaacaactctagaacctttgatcttaccatgtgacaacttattaaatgtcaaagtaagaactccattt |
533 |
Q |
| |
|
||||| || |||||||| |||||| || ||||||||| ||||| || ||| ||||||||||||||||||||| || ||| ||||||||||| |||||| |
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|
| T |
33426545 |
cttgcttgctttctcattctcctcctcaatgctaacaagtctagtacttttaatcttaccatgtgacaacttacgaagtgttaaagtaagaacaccattt |
33426446 |
T |
|
| Q |
534 |
tccttattagccttaattgaatccaaatcagcattctctggcaatcttaactgtctccagaattttccatacaccctttcaactttgtgccaacgatcac |
633 |
Q |
| |
|
||| | || ||||||| ||||||||||||||||| || |||||||| ||||||||||| ||||||||||| |||||| || | ||||||||||||| |
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|
| T |
33426445 |
tccatcttggccttaaccgaatccaaatcagcattttcaggcaatctaaactgtctccaaaattttccatatgatctttcagctctatgccaacgatcac |
33426346 |
T |
|
| Q |
634 |
cttttttctcagcttctttcttcctttctccaataattctcagcatgccgttctct |
689 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||| | |||||||| || ||||||| |
|
|
| T |
33426345 |
cttttttctcctcttctttctttctttctccaatcactctcagcacgctgttctct |
33426290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 443 - 661
Target Start/End: Original strand, 34322710 - 34322928
Alignment:
| Q |
443 |
tttctcatcctcctcatccttgctaacaactctagaacctttgatcttaccatgtgacaacttattaaatgtcaaagtaagaactccattttccttatta |
542 |
Q |
| |
|
|||||||||||||||| | ||||||| | ||||| ||||||||||||| |||||||||||||||||| |||||||||||| || ||||||||| | ||| |
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|
| T |
34322710 |
tttctcatcctcctcagcaatgctaaccattctaggacctttgatcttatcatgtgacaacttattaagtgtcaaagtaagtacaccattttccatctta |
34322809 |
T |
|
| Q |
543 |
gccttaattgaatccaaatcagcattctctggcaatcttaactgtctccagaattttccatacaccctttcaactttgtgccaacgatcaccttttttct |
642 |
Q |
| |
|
||||| | ||||||||||||| |||| || |||||||| || || ||||||||||| ||||| ||||||||| | |||||| ||||||||| ||||| |
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|
| T |
34322810 |
gccttcactgaatccaaatcaacattttcaggcaatctaaattgcctccagaatttcccataagatctttcaactctatgccaatgatcaccttgtttct |
34322909 |
T |
|
| Q |
643 |
cagcttctttcttcctttc |
661 |
Q |
| |
|
| |||||||||||||||| |
|
|
| T |
34322910 |
cttcttctttcttcctttc |
34322928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 463 - 661
Target Start/End: Complemental strand, 34312241 - 34312043
Alignment:
| Q |
463 |
tgctaacaactctagaacctttgatcttaccatgtgacaacttattaaatgtcaaagtaagaactccattttccttattagccttaattgaatccaaatc |
562 |
Q |
| |
|
||||||| | ||||| |||||| ||||| | |||||||||||||||| |||||||||||| || ||||||||| | |||||||||| ||| |||||||| |
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|
| T |
34312241 |
tgctaaccattctaggacctttagtcttatcttgtgacaacttattaagtgtcaaagtaagtacaccattttccattttagccttaactgagtccaaatc |
34312142 |
T |
|
| Q |
563 |
agcattctctggcaatcttaactgtctccagaattttccatacaccctttcaactttgtgccaacgatcaccttttttctcagcttctttcttcctttc |
661 |
Q |
| |
|
| |||| ||||||||||| || || ||||||||||||||||| ||||||||| |||||||| ||||||||| |||||| |||||||||||||||| |
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|
| T |
34312141 |
aacattttctggcaatctaaattgcctccagaattttccataagatctttcaactctgtgccaatgatcaccttgtttctcttcttctttcttcctttc |
34312043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 124 - 199
Target Start/End: Complemental strand, 34315003 - 34314928
Alignment:
| Q |
124 |
atataaaaaataatgaagacaaaatgacaaataatatcataatttaaagagacatagagtaaagacaatattcctt |
199 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||| |||||| |||| ||||||| ||||||||| |
|
|
| T |
34315003 |
atataaaaaataatgaagacaaaacgacaaataatatcataattcaaagagttataggataaagacgatattcctt |
34314928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 212 - 254
Target Start/End: Complemental strand, 34314912 - 34314870
Alignment:
| Q |
212 |
ccattcaattcaagaagcatcaaacatacaaaataaagctaca |
254 |
Q |
| |
|
||||||||||||||||| |||||||||| || ||||||||||| |
|
|
| T |
34314912 |
ccattcaattcaagaagtatcaaacataaaagataaagctaca |
34314870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 509 - 689
Target Start/End: Original strand, 25651237 - 25651417
Alignment:
| Q |
509 |
aaatgtcaaagtaagaactccattttccttattagccttaattgaatccaaatcagcattctctggcaatcttaactgtctccagaattttccatacacc |
608 |
Q |
| |
|
|||||| ||||||||||| |||| |||| | || | |||||| |||||||||||| |||| ||||| ||||| | |||||||||||||||||| ||| | |
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|
| T |
25651237 |
aaatgttaaagtaagaacaccatcttccatctttgtcttaatcgaatccaaatcaacattttctggtaatctaagttgtctccagaattttccacacatc |
25651336 |
T |
|
| Q |
609 |
ctttcaactttgtgccaacgatcaccttttttctcagcttctttcttcctttctccaataattctcagcatgccgttctct |
689 |
Q |
| |
|
||||||||| | ||||||||||||| ||| ||||| |||||| |||||||||||||||| ||| |||| || ||||||| |
|
|
| T |
25651337 |
ctttcaactctatgccaacgatcacttttgttctcctgttcttttttcctttctccaataactcttagcacgctgttctct |
25651417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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