View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11516_high_10 (Length: 405)
Name: NF11516_high_10
Description: NF11516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11516_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 387
Target Start/End: Original strand, 44611207 - 44611593
Alignment:
| Q |
1 |
gggtctactagtgcttactatacaagctcacataccaccaaactgtattatggggagcaccaacagtttaagcaagacagttcaaggtggaaaagcagct |
100 |
Q |
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| T |
44611207 |
gggtctactagtgcttactatacaagctcacataccaccaaactgtgttatggggagcaccaacaatttatgcaagacagttcaaggtggaaaagcagct |
44611306 |
T |
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| Q |
101 |
atgctatttgcaggcctctatcttgtggcacttggagtagggggaataaaaggttcacttcctcctcatggagctgaacaatttgatgagactacaccag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44611307 |
atgctatttgcaggcctctatcttgtggcacttggagtagggggaataaaaggttcacttcctcctcatggagctgaacaatttgatgagactacaccag |
44611406 |
T |
|
| Q |
201 |
aaggaagaaagaaaaggtctgaattttttaactactttgtcttcagcctgtcatgtggtgcattgtttgcagttacttttgtggtgtggattgaagacaa |
300 |
Q |
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| T |
44611407 |
aaggaagaaagaaaaggtctgaattttttaactactttgtcttcagcctgtcatgtggtgcattgtttgcagttacttttgtggtgtggattgaagacaa |
44611506 |
T |
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| Q |
301 |
caaaggatggcagtggggtttaggtgtatcaactgcttcaatattgctctccattccagtttttcttcttggttcacacaagtatag |
387 |
Q |
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| T |
44611507 |
caaaggatggcagtggggtttaggtgtatcaactgcttcaatattgctctccattccagtttttcttcttggttcacacaagtatag |
44611593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 86 - 321
Target Start/End: Original strand, 16828375 - 16828610
Alignment:
| Q |
86 |
ggtggaaaagcagctatgctatttgcaggcctctatcttgtggcacttggagtagggggaataaaaggttcacttcctcctcatggagctgaacaatttg |
185 |
Q |
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| T |
16828375 |
ggtggaaaagcagcaatgttatttgctggtctatatctagtagcacttggagttggaggaataaaaggatctttaccagttcatggtggtgaacaatttg |
16828474 |
T |
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| Q |
186 |
atgagactacaccagaaggaagaaagaaaaggtctgaattttttaactactttgtcttcagcctgtcatgtggtgcattgtttgcagttacttttgtggt |
285 |
Q |
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|||| |||||||| | ||||| ||| |||| || || || ||||||||||| || | || ||||||||||| | |||||||||||||||| || |
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| T |
16828475 |
atgaagctacaccaaatggaaggaagcaaagatcaactttcttcaactactttgttttttgtctatcatgtggtgcccttattgcagttacttttgttgt |
16828574 |
T |
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| Q |
286 |
gtggattgaagacaacaaaggatggcagtggggttt |
321 |
Q |
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| T |
16828575 |
ttgggttgaagataataaaggttgggaatggggttt |
16828610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 297
Target Start/End: Complemental strand, 25171871 - 25171801
Alignment:
| Q |
227 |
tttaactactttgtcttcagcctgtcatgtggtgcattgtttgcagttacttttgtggtgtggattgaaga |
297 |
Q |
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||||||||||| |||| ||| | ||||||||||| | |||||||||||||||| |||||||||||||| |
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| T |
25171871 |
tttaactacttcatctttagcttagcatgtggtgcacttattgcagttacttttgttgtgtggattgaaga |
25171801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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