View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11516_high_11 (Length: 383)
Name: NF11516_high_11
Description: NF11516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11516_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 20 - 364
Target Start/End: Original strand, 6993320 - 6993664
Alignment:
| Q |
20 |
cagaagcattgaaagactccaatagtgtgaaatttgcaagagcatcaacttcaaaacttgggttaagacgacctttgtgggttctattcaacccagccac |
119 |
Q |
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| T |
6993320 |
cagaagcattgaaagactccaatagtgtgaaatttgcaagagcatcaacttcaaaactcgggttaagacgacctttgtgggttctattcaacccagccac |
6993419 |
T |
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| Q |
120 |
tttgataccaacaacttgatcgttccggcactcaacaccggtccagttccgacatggatcagnnnnnnnaggccactccttcccccttatccccatcgat |
219 |
Q |
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| T |
6993420 |
tttgataccaacaacttgatcgttccggcactcaacaccggtccagttccgacatggatcagtttttttaggccactccttcccccttatccccatcgat |
6993519 |
T |
|
| Q |
220 |
gaacgaagctccaataacgctgaccattcagttcttgaactcaaactcactgttaactctactaacaaaaacaataccataacaacactcactattattc |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
6993520 |
gaacgaagctccaataacgctgaccattcagttcttgaactcaaactcactgttaactctactaacaaaaacaataccataacaacactcactgttattc |
6993619 |
T |
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| Q |
320 |
cactcttcattttcatttccaactctaacaaacttcacttcactt |
364 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6993620 |
cactcttcattttcatttccaactctaacaaacttcacttcactt |
6993664 |
T |
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