View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11516_high_3 (Length: 626)
Name: NF11516_high_3
Description: NF11516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11516_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 424; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 113 - 605
Target Start/End: Complemental strand, 45541847 - 45541358
Alignment:
| Q |
113 |
actaaatctactttgtaatgcacatgtatataatacaataaaaatggaagttggcttggcaaaagaccctacttgatgatcaccctgcgagtgctagtga |
212 |
Q |
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| T |
45541847 |
actaaatctactttgtaatgcacatgtatataatacaataaaaatggaagttggcttggcaaaagaccctacttgatgatcaccctgcgagtgctagtga |
45541748 |
T |
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| Q |
213 |
caaaatgtacaacacgaaaagcagcttagccatctatttggaggtgcgtctgtgtttgacttttgtgtctgatcaacttcttctgttttttcattttgct |
312 |
Q |
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| T |
45541747 |
caaaatgtacaacacgaaaagcagcttagccatctatttggaggtgcgtctgtgtttgacttttgtgtctgatcaacttcttctgttttttcattttgct |
45541648 |
T |
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| Q |
313 |
ctgatttcatatttgctgtgttattctctccaatacccttggatgagacacttttatctccatctttcgatcttcaaaataatgaacac-nnnnnnntaa |
411 |
Q |
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| T |
45541647 |
ctgatttcatatttggtgtgttattctctccaacacccttggatgagacacttttatctccatctttcgatcttcaaaataatgaacacaaaaaaaaaaa |
45541548 |
T |
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| Q |
412 |
ttaaatagtttactcaatggcaactcaactaagcatatcatgcaattataattaatacatacaaaaaggtggtaagtgattgaagcttacgttttaaaag |
511 |
Q |
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| T |
45541547 |
ttaaatagtttgcccaatggcaactcaactaagcatatcatgcaatt----gtaatacatacaaaaaggtggtaagtgattgaagcttacgttttaaaag |
45541452 |
T |
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| Q |
512 |
cgtaggatcctgtgctaccatgtgactgatgtcgagaattagattttttatcttcctttttaacaacatactttgtagtttgactactctccat |
605 |
Q |
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| T |
45541451 |
cgtaggatcctgtgctaccatgtgactgatgtcgagaattagattttttatcttcctttttaacaacatactttgtagtttgactactctccat |
45541358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 45542138 - 45542072
Alignment:
| Q |
19 |
aaaatcctctcttcaaaacttgtacattgttttatgtgggcagctaaataagatacgttttatttgct |
86 |
Q |
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| T |
45542138 |
aaaatcttctcttcaaaacttgt-cattgttttttgtgggcagctaaataagatacgttttagttgct |
45542072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 114
Target Start/End: Complemental strand, 45541986 - 45541952
Alignment:
| Q |
80 |
atttgctaacatgttgaaagtacaattactctaac |
114 |
Q |
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| T |
45541986 |
atttgctaacatgttgaaagtacaattactctaac |
45541952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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