View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11516_high_30 (Length: 256)
Name: NF11516_high_30
Description: NF11516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11516_high_30 |
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Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 36133916 - 36133672
Alignment:
| Q |
1 |
aatgactctgcaattggtttttgagcatgaacaagaaccggaaccttcttgtgaaccgggttcaattccaaaaggagaggagttttgttgaagatatctt |
100 |
Q |
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| T |
36133916 |
aatgactctgcaattggtttctgagcatgaacaagaaccggaaccttcttgtgaaccgggttcaattccaaaaggagaggagttttgttgaagatatctt |
36133817 |
T |
|
| Q |
101 |
cttctacatactcataatttacacccttgagcttcaaggcccactcaaccctcttaacaaatggactcacccaaaagcctaccaacttcacatcttggct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36133816 |
cttctacatactcataatttacacccttgagcttcaaggcccactcaaccctcttaacaaatggactcacccaaaagcctaccaacttcacatcttggct |
36133717 |
T |
|
| Q |
201 |
tcccatgatattatattgttgtacaagtttgtttcctatgtctct |
245 |
Q |
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| T |
36133716 |
tcccatgatattatattgttgtacaagtttgtttcctctgtctct |
36133672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 4 - 131
Target Start/End: Complemental strand, 36120577 - 36120450
Alignment:
| Q |
4 |
gactctgcaattggtttttgagcatgaacaagaaccggaaccttcttgtgaaccgggttcaattccaaaaggagaggagttttgttgaagatatcttctt |
103 |
Q |
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||||||||||||| || || ||||||||||||| ||||| ||||| ||||||||||||| ||||||||| ||| | ||||||||||||||||||||| |
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| T |
36120577 |
gactctgcaattgacttctggccatgaacaagaactggaactttcttatgaaccgggttcatttccaaaagaagactacttttgttgaagatatcttctt |
36120478 |
T |
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| Q |
104 |
ctacatactcataatttacacccttgag |
131 |
Q |
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| T |
36120477 |
ctatataatcaaactcaacacccttgag |
36120450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 2684933 - 2684817
Alignment:
| Q |
1 |
aatgactctgcaattggtttttgagcatgaacaagaaccggaaccttcttgtgaaccgggttcaattccaaaaggagaggagttttgttgaagatatctt |
100 |
Q |
| |
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|||||||||| |||||||||||| ||||| |||||||| |||||||||||||||| ||||||| |||||||| || ||| ||| |||||||||||||| |
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| T |
2684933 |
aatgactctggaattggtttttgggcatggacaagaactggaaccttcttgtgaa-cgggttccattccaaatggggagagctttcgttgaagatatctt |
2684835 |
T |
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| Q |
101 |
cttctacatactcataat |
118 |
Q |
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||||||| |||||||||| |
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| T |
2684834 |
cttctacgtactcataat |
2684817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 99
Target Start/End: Complemental strand, 2668865 - 2668770
Alignment:
| Q |
4 |
gactctgcaattggtttttgagcatgaacaagaaccggaaccttcttgtgaaccgggttcaattccaaaaggagaggagttttgttgaagatatct |
99 |
Q |
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|||||||||||||||| ||| |||| |||||||| | |||||| ||||||||| |||| ||||||||| |||||||| |||| || || |||||| |
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| T |
2668865 |
gactctgcaattggttgttggacatggacaagaactgcaacctttttgtgaaccaggtttaattccaaatggagaggacttttttttaatatatct |
2668770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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