View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11516_high_4 (Length: 606)
Name: NF11516_high_4
Description: NF11516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11516_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 1 - 588
Target Start/End: Original strand, 41956494 - 41957092
Alignment:
| Q |
1 |
ttttaatcgttatatgtatatcatattaatgcgtgatatatgtggatgaactccnnnnnnnnnnttgtaagtggatgnnnnnnnttccttctaaaaatag |
100 |
Q |
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| T |
41956494 |
ttttaatcgttatgtgtatatcatattaatgcgtgatatatgtggatgaactccaaaaaaaaaattgtaagtggatgaaaaaaattccttctaaaaatag |
41956593 |
T |
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| Q |
101 |
ttcataaccaaatgaataataccttgaactctcctgatccaacgctatataagtcaaaactcatccaacaaatatatgtttaacaaattcttagagaatt |
200 |
Q |
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| T |
41956594 |
ttcataaccaaatgaataataccttgaactctcctgatccaacgctatataagtcaaaactcatccaacaaatatatgtttaacaaattcttagagaatt |
41956693 |
T |
|
| Q |
201 |
tccaatgttcaaaatattataattacattagtaatctataaaaatataattggt-----------agttacatagttacaatgtgatgaactaaagttca |
289 |
Q |
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| T |
41956694 |
tccaatgttcaaaatattataattacattagtaatctataaaaatataattggtttagcagaaaaagttacatagttacaatgtgatcaactaaagttca |
41956793 |
T |
|
| Q |
290 |
aatcctagttgggagaaatacttatattagttttaacttatcctnnnnnnn-ctaacttgtaatacttatattagttctatctatannnnnnngtaaaac |
388 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |||| |
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| T |
41956794 |
aatcctagttgggagaaatacttatattagttttaacttatcctaaaaaaaactaacttgtaatacttatattagttctatctatatttttt-gtgaaac |
41956892 |
T |
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| Q |
389 |
ttactttttctgaa-acaccccatagtgtctaatattatcgagcttgatacgtagatgacttaaaataaatggactataataccatattagatctttaga |
487 |
Q |
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|||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||| |
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| T |
41956893 |
ttactttt-ctgaatacaccccatagtgtctaatattatcgagcttgatacgtggatggcttaaaataaatggactataatactatattagatctttaga |
41956991 |
T |
|
| Q |
488 |
ttaatcttaactaatcctcacaaaatcaacatgtaagaattaagatagtgtgagtcactcagtctttgtaactcatttcaagtggctcaaagggtggttt |
587 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41956992 |
ttagtcttaactaatcctcacaaaatcaacatgtaagaattaagatagtgtgagtcactcagtctttgtaactcatttcaagtggctcaaagggtggttt |
41957091 |
T |
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