View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11516_high_5 (Length: 566)
Name: NF11516_high_5
Description: NF11516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11516_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 17 - 476
Target Start/End: Original strand, 35250388 - 35250846
Alignment:
| Q |
17 |
aataagtatttatagacaaatctattctactgattaatacaatgtgatctaaagtgtctagctttgcctgattattttcacaaatagtgtgcaagttttt |
116 |
Q |
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|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
35250388 |
aataagtatttatagacaaatctattctactgatcagtacaatgtgatctaaagtgtctagctttgcctgattattttcacggatagtgtgcaagttttt |
35250487 |
T |
|
| Q |
117 |
ctttggtttagaggatcgtggcaccccacggtcgactataagcttcccacttcacgacatgatatattgacgaagcccatagtgcacaacctttcctcaa |
216 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
35250488 |
ctttggtttagaggatcatggcaccccacggtcgactataagcttcccacttcacgacatgatatattgacgaagcccataatgcacaacctttcctcaa |
35250587 |
T |
|
| Q |
217 |
aacttgcatccttacactttgttcagtggagttagtgacactatatatatgaaacttgagtttgatgcataatcgtcgagttcttctgcatactagtatg |
316 |
Q |
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|||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| || |
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| T |
35250588 |
aacttgtatccttacacttcgttcagtggagttagtgacactatatacatgaaacttgagtttgatgcataattgtcgagttcttctgcatactagtctg |
35250687 |
T |
|
| Q |
317 |
tagacttgnnnnnnnnccatttatccctaattggacagtcatagtctttgcctaaccttctatcaacaaaggataacttgccaagtgttcttttaattat |
416 |
Q |
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|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
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| T |
35250688 |
tagacttg-aaaaaaaccatttatccctaattggacggtcatagtctttgcctaaccttctatcaattaaggataacttgccaagtgttcttttaatatt |
35250786 |
T |
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| Q |
417 |
tattttttggtacaccttaccaagtattctaatcgtttatctatcaattacgctcgacaa |
476 |
Q |
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| |||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
35250787 |
tttttttttatacaccttaccaagtattctaatcgtctatctatcaattacgcttgacaa |
35250846 |
T |
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