View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11516_high_6 (Length: 548)

Name: NF11516_high_6
Description: NF11516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11516_high_6
NF11516_high_6
[»] chr4 (22 HSPs)
chr4 (16-532)||(2391100-2391616)
chr4 (227-529)||(2381475-2381777)
chr4 (40-514)||(2382599-2383070)
chr4 (228-508)||(2380241-2380512)
chr4 (40-194)||(2380558-2380714)
chr4 (244-376)||(2533992-2534124)
chr4 (41-152)||(2381814-2381927)
chr4 (314-377)||(2621399-2621462)
chr4 (244-367)||(2547223-2547346)
chr4 (314-435)||(2525504-2525625)
chr4 (244-353)||(2367923-2368032)
chr4 (314-354)||(12124594-12124634)
chr4 (314-359)||(2361217-2361262)
chr4 (314-443)||(2467294-2467423)
chr4 (322-359)||(2486064-2486101)
chr4 (407-439)||(2376407-2376439)
chr4 (313-354)||(2373488-2373529)
chr4 (242-283)||(12124522-12124563)
chr4 (322-377)||(2393829-2393885)
chr4 (400-444)||(2477421-2477465)
chr4 (244-284)||(2625588-2625628)
chr4 (322-354)||(12126658-12126690)
[»] chr5 (1 HSPs)
chr5 (309-366)||(41900496-41900553)


Alignment Details
Target: chr4 (Bit Score: 456; Significance: 0; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 16 - 532
Target Start/End: Complemental strand, 2391616 - 2391100
Alignment:
Q  16 cctgtgaattatcactatggagtatatcatcaccatctaggttattcttctcctctgaaaggtcgagggttgctgtggagataatcaataaattggctat 115  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2391616 cctgggaattatcactatggagtatatcatcaccatctaggttattcttctcctctgaaaggtcgagggttgctgtggagataatcaataaattggctat 2391517  T
Q  116 cgatgtcataaccatacaaactaatctttcggagtttgggaagtgccaaaaaatgattatcttcatctagcacaaaatcgaacttcctagcagaagtgta 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  2391516 cgatgtcataaccatacaaactaatctttcggagtttgggaagtgccaaaaaattattatcttcatctagcacaaaatcgaacttcctagcagaagtgta 2391417  T
Q  216 atcagtgcagtctgtttccttgagaacaagttcttcaagtaaagggaagcaatcaacaatgaagaagatatccttcttgttgatccnnnnnnnttcgaaa 315  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||       |||| ||    
T  2391416 atcactgcagtctgtttccttgagaacaagttcttcgagtaaagggaagcaatcaacaatgaagaagatatccttcttgttgatccaaaaaaattcggaa 2391317  T
Q  316 caagtaagagaggtcaaatttttcatctttttggacaaagctcggaacccatctttaggaattttgtagaagttggaaagaatgagcgatctgaggtcta 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||    
T  2391316 caagtaagagaggtcaaatttttcatctttttggacaaagctcggaacccatctttagggattttgtagaagttggaaagaatgagcgatctgaggacta 2391217  T
Q  416 aagggaaagtggagatttgggtaagaagcgtgttggggtgattgtgttgagagaagtaattgaggttggtggatgtgagattgagggatgtgacattaga 515  Q
    |||||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2391216 aagggaaagtggagatttgggtaagaagcgtgttggggcgattgcattgagagaagtaattgaggttggtggatgtgagattgagggatgtgacattaga 2391117  T
Q  516 gaaccgttggaagattt 532  Q
    |||||||||||||||||    
T  2391116 gaaccgttggaagattt 2391100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 227 - 529
Target Start/End: Complemental strand, 2381777 - 2381475
Alignment:
Q  227 ctgtttccttgagaacaagttcttcaagtaaagggaagcaatcaacaatgaagaagatatccttcttgttgatccnnnnnnnttcgaaacaagtaagaga 326  Q
    |||||| ||||||||| |||||||| ||||||||||||||||| |||||||| |||| |||||||||||||||||       |||  |||||||||||||    
T  2381777 ctgttttcttgagaacgagttcttcgagtaaagggaagcaatcgacaatgaataagaaatccttcttgttgatccaagtaatttcagaacaagtaagaga 2381678  T
Q  327 ggtcaaatttttcatctttttggacaaagctcggaacccatctttaggaattttgtagaagttggaaagaatgagcgatctgaggtctaaagggaaagtg 426  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||  | || ||||| | |||||||||| |||||||||||||||||| |    
T  2381677 ggtcaaatttttcatctttttggacaaagctcggaacccatctttagggattttaaaaaacttggagaaaatgagcgatttgaggtctaaagggaaagcg 2381578  T
Q  427 gagatttgggtaagaagcgtgttggggtgattgtgttgagagaagtaattgaggttggtggatgtgagattgagggatgtgacattagagaaccgttgga 526  Q
    |||||||||||||||||| ||||||||||||||||| |||| |||||| |||||||| |||||| ||||||||||||||||||| ||||||| |||||||    
T  2381577 gagatttgggtaagaagcatgttggggtgattgtgtagagaaaagtaagtgaggttgctggatgcgagattgagggatgtgacactagagaagcgttgga 2381478  T
Q  527 aga 529  Q
    |||    
T  2381477 aga 2381475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 40 - 514
Target Start/End: Complemental strand, 2383070 - 2382599
Alignment:
Q  40 tatcatcaccatctaggttattcttctcctctg--aaaggtcgagggttgctgtggagataatcaataaattggctatcgatgtcataaccatacaaact 137  Q
    |||||| |||||||| |||||||||||||||||  ||||||| | ||||  || | ||||||| ||||| |||||||||||||  || |||||||||| |    
T  2383070 tatcattaccatctaagttattcttctcctctgtgaaaggtccacggtttttgcgaagataattaataatttggctatcgatggaattaccatacaaatt 2382971  T
Q  138 aatctttcggagtttgggaagtgccaaaaaatgattatcttcatctagcacaaaatcgaacttcctagcagaagtgta---atcagtgcagtctgtttcc 234  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||  || |||| || ||||| |||   | |   |||   |||||||    
T  2382970 aatctttcggagtttgggaagtgccaaaaattgattatcatcatctagcacaaaataaaagttccaagtagaagggtactgacctacgcatcatgtttcc 2382871  T
Q  235 ttgagaacaagttcttcaagtaaagggaagcaatcaacaatgaagaagatatccttcttgttgatccnnnnnnnttcgaaacaagtaagagaggtcaaat 334  Q
    |||||||| ||| | || ||||||||||||||||   |||||||  ||||||||||||   | ||         || ||||||| | | ||| ||||| |    
T  2382870 ttgagaacgagtacatcgagtaaagggaagcaattggcaatgaaatagatatccttctacgtaat---------tttgaaacaaatgaaagaagtcaatt 2382780  T
Q  335 ttttcatctttttggacaaagctcggaacccatctttaggaattttgtagaagttggaaagaatgagcgatctgaggtctaaagggaaagtggaga-ttt 433  Q
    ||||||||||||||||||||||||| || |||| | || | |||||| ||| |||||| |||||||| ||| |||| ||||||||  ||   |||| |||    
T  2382779 ttttcatctttttggacaaagctcgcaatccatttatatggattttgaagaggttggagagaatgagtgatttgagatctaaaggtgaaacagagatttt 2382680  T
Q  434 gggtaagaagcgtgttggggtgattgtgttgagagaagtaattgaggttggtggatgtgagattgagggatgtgacattag 514  Q
    |  |||||||||||||| ||| ||||| ||||||||||| | ||||||||  |||||||| ||||||||||||||||||||    
T  2382679 gcataagaagcgtgttgaggtaattgtattgagagaagtgagtgaggttgagggatgtgatattgagggatgtgacattag 2382599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 228 - 508
Target Start/End: Complemental strand, 2380512 - 2380241
Alignment:
Q  228 tgtttccttgagaacaagttcttcaagtaaagggaagcaatcaacaatgaagaagatatccttcttgttgatccnnnnnnnttcgaaacaagtaagagag 327  Q
    ||||||||||||||| ||| |||||||| |||||||||||||| |||||||| | ||||||||||| |||||||       || ||||||  | | |||     
T  2380512 tgtttccttgagaacgagtacttcaagtgaagggaagcaatcagcaatgaagtaaatatccttcttattgatccaagtaattttgaaacacatgaaagaa 2380413  T
Q  328 gtcaaatttttcatctttttggacaaagctcggaacccatctttaggaattttgtagaagttggaaagaatgagcgatctgaggtctaaagggaaagtgg 427  Q
    |||||||||||||||||||||||||||| ||| || |||| ||| || |||||| ||| |||||| |||||||||||| |||| |||||||| |||| ||    
T  2380412 gtcaaatttttcatctttttggacaaaggtcgcaatccatttttcgggattttgaagaggttggagagaatgagcgatttgagatctaaaggtaaagcgg 2380313  T
Q  428 agatttgggtaagaagcgtgttggggtgattgtgttgagagaagtaattgaggttggtggatgtgagattgagggatgtga 508  Q
    ||||||| ||||||||||||||| ||||||||| |||||          ||||||| ||||||||||||||||||||||||    
T  2380312 agatttgtgtaagaagcgtgttgaggtgattgtattgag---------ggaggttgatggatgtgagattgagggatgtga 2380241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 40 - 194
Target Start/End: Complemental strand, 2380714 - 2380558
Alignment:
Q  40 tatcatcaccatctaggttattcttctcctc--tgaaaggtcgagggttgctgtggagataatcaataaattggctatcgatgtcataaccatacaaact 137  Q
    |||||| |||||||| |||||||||||||||  ||||||||| | ||||  || ||||||||| ||||| |||||||||||||   | ||||||||||||    
T  2380714 tatcattaccatctaagttattcttctcctccgtgaaaggtccacggtttttgcggagataattaataatttggctatcgatggagttaccatacaaact 2380615  T
Q  138 aatctttcggagtttgggaagtgccaaaaaatgattatcttcatctagcacaaaatc 194  Q
    ||||||||||||||| |||||||| ||||| | |||||| ||||||||| |||||||    
T  2380614 aatctttcggagttttggaagtgctaaaaatttattatcatcatctagctcaaaatc 2380558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 244 - 376
Target Start/End: Original strand, 2533992 - 2534124
Alignment:
Q  244 agttcttcaagtaaagggaagcaatcaacaatgaagaagatatccttcttgttgatccnnnnnnnttcgaaacaagtaagagaggtcaaatttttcatct 343  Q
    |||||||||||||||||||| |||||| |||| ||||||| ||| |||||||||||         ||   ||||||| ||||| || |||||||||||||    
T  2533992 agttcttcaagtaaagggaaacaatcagcaatcaagaagagatcattcttgttgatatagctcatttgataacaagtgagagatgttaaatttttcatct 2534091  T
Q  344 ttttggacaaagctcggaacccatctttaggaa 376  Q
    | |||||||||||||||||| ||| || |||||    
T  2534092 tcttggacaaagctcggaactcattttcaggaa 2534124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 41 - 152
Target Start/End: Complemental strand, 2381927 - 2381814
Alignment:
Q  41 atcatcaccatctaggttattcttctcctctg--aaaggtcgagggttgctgtggagataatcaataaattggctatcgatgtcataaccatacaaacta 138  Q
    ||||| |||||||| ||||||||||| |||||  ||||||| | ||||| || ||||||||| ||||||||||| ||| |||| |  ||||  |||||||    
T  2381927 atcattaccatctaagttattcttctactctgtgaaaggtccacggttgttgcggagataattaataaattggcgatcaatgtaaataccacgcaaacta 2381828  T
Q  139 atctttcggagttt 152  Q
    ||||||||||||||    
T  2381827 atctttcggagttt 2381814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 314 - 377
Target Start/End: Complemental strand, 2621462 - 2621399
Alignment:
Q  314 aacaagtaagagaggtcaaatttttcatctttttggacaaagctcggaacccatctttaggaat 377  Q
    ||||||| ||||| |||||||||||||| |||||||| |||||||| ||||||||| |||||||    
T  2621462 aacaagtgagagatgtcaaatttttcatatttttggagaaagctcgcaacccatctgtaggaat 2621399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 244 - 367
Target Start/End: Original strand, 2547223 - 2547346
Alignment:
Q  244 agttcttcaagtaaagggaagcaatcaacaatgaagaagatatccttcttgttgatccnnnnnnnttcgaaacaagtaagagaggtcaaatttttcatct 343  Q
    |||||||||||||||||||| |||||| |||||||||| | ||| |||||| ||||         || | ||||| | ||||| ||||||||||||||||    
T  2547223 agttcttcaagtaaagggaaacaatcagcaatgaagaataaatcattcttgctgataaaggtgattttggaacaaatgagagacgtcaaatttttcatct 2547322  T
Q  344 ttttggacaaagctcggaacccat 367  Q
    |||  ||||||||||| |||||||    
T  2547323 tttcagacaaagctcgcaacccat 2547346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 314 - 435
Target Start/End: Original strand, 2525504 - 2525625
Alignment:
Q  314 aacaagtaagagaggtcaaatttttcatctttttggacaaagctcggaacccatctttaggaattttgtagaagttggaaagaatgagcgatctgaggtc 413  Q
    ||||||| ||||| |||||||||||||| || ||||||||| | || ||| ||| || |||||  |||  |  || | | ||| |||||||| |||||||    
T  2525504 aacaagtgagagatgtcaaatttttcattttcttggacaaaacacgcaactcattttgaggaaccttgggggggtggtagagagtgagcgatttgaggtc 2525603  T
Q  414 taaagggaaagtggagatttgg 435  Q
    ||||||||||||||||||||||    
T  2525604 taaagggaaagtggagatttgg 2525625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 244 - 353
Target Start/End: Complemental strand, 2368032 - 2367923
Alignment:
Q  244 agttcttcaagtaaagggaagcaatcaacaatgaagaagatatccttcttgttgatccnnnnnnnttcgaaacaagtaagagaggtcaaatttttcatct 343  Q
    |||||||| ||||||||||| |||||| |||||||||||| |||  ||||||  || |       | || ||||||||||||||||||| |||||||||     
T  2368032 agttcttcgagtaaagggaaacaatcagcaatgaagaagagatcactcttgtgaatactaatcattccggaacaagtaagagaggtcaagtttttcatcc 2367933  T
Q  344 ttttggacaa 353  Q
    ||||||||||    
T  2367932 ttttggacaa 2367923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 314 - 354
Target Start/End: Original strand, 12124594 - 12124634
Alignment:
Q  314 aacaagtaagagaggtcaaatttttcatctttttggacaaa 354  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  12124594 aacaagtgagagaggtcaaatttttcatctttttggacaaa 12124634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 314 - 359
Target Start/End: Complemental strand, 2361262 - 2361217
Alignment:
Q  314 aacaagtaagagaggtcaaatttttcatctttttggacaaagctcg 359  Q
    ||||||| ||||| |||||||||||||| |||||||||||||||||    
T  2361262 aacaagtgagagatgtcaaatttttcatttttttggacaaagctcg 2361217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 314 - 443
Target Start/End: Original strand, 2467294 - 2467423
Alignment:
Q  314 aacaagtaagagaggtcaaatttttcatctttttggacaaagctcggaacccatctttaggaattttgtagaagttggaaagaatgagcgatctgaggtc 413  Q
    ||||||| || || |||||||||||||||| |||||| |||||||| |||||||||  |||||   |   |  || | | ||| |||| ||| |||||||    
T  2467294 aacaagtgagtgatgtcaaatttttcatctctttggagaaagctcgcaacccatctgcaggaaccgttatggggtggtagagagtgagggatttgaggtc 2467393  T
Q  414 taaagggaaagtggagatttgggtaagaag 443  Q
     ||||||||||||||||||| |||||||||    
T  2467394 caaagggaaagtggagattttggtaagaag 2467423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 322 - 359
Target Start/End: Original strand, 2486064 - 2486101
Alignment:
Q  322 agagaggtcaaatttttcatctttttggacaaagctcg 359  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  2486064 agagatgtcaaatttttcatctttttggacaaagctcg 2486101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 407 - 439
Target Start/End: Complemental strand, 2376439 - 2376407
Alignment:
Q  407 tgaggtctaaagggaaagtggagatttgggtaa 439  Q
    |||||||||||||||||||||||||||||||||    
T  2376439 tgaggtctaaagggaaagtggagatttgggtaa 2376407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 354
Target Start/End: Complemental strand, 2373529 - 2373488
Alignment:
Q  313 aaacaagtaagagaggtcaaatttttcatctttttggacaaa 354  Q
    |||||||| ||||||||||||| ||||||||||| |||||||    
T  2373529 aaacaagtgagagaggtcaaatatttcatcttttcggacaaa 2373488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 283
Target Start/End: Original strand, 12124522 - 12124563
Alignment:
Q  242 caagttcttcaagtaaagggaagcaatcaacaatgaagaaga 283  Q
    |||||||||| ||||||||||| |||||| ||||||||||||    
T  12124522 caagttcttctagtaaagggaaacaatcagcaatgaagaaga 12124563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 322 - 377
Target Start/End: Complemental strand, 2393885 - 2393829
Alignment:
Q  322 agagaggtcaaattttt-catctttttggacaaagctcggaacccatctttaggaat 377  Q
    ||||| ||||||||||| |||||||| |||||||||||| ||||||| |||| ||||    
T  2393885 agagatgtcaaattttttcatcttttgggacaaagctcgcaacccatttttatgaat 2393829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 400 - 444
Target Start/End: Original strand, 2477421 - 2477465
Alignment:
Q  400 agcgatctgaggtctaaagggaaagtggagatttgggtaagaagc 444  Q
    |||||||||||||||| ||  |||||||| |||||||||||||||    
T  2477421 agcgatctgaggtctatagctaaagtggatatttgggtaagaagc 2477465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 244 - 284
Target Start/End: Complemental strand, 2625628 - 2625588
Alignment:
Q  244 agttcttcaagtaaagggaagcaatcaacaatgaagaagat 284  Q
    |||||||| ||||||||||| ||||||||||| ||||||||    
T  2625628 agttcttcgagtaaagggaaacaatcaacaataaagaagat 2625588  T

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Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 322 - 354
Target Start/End: Original strand, 12126658 - 12126690
Alignment:
Q  322 agagaggtcaaatttttcatctttttggacaaa 354  Q
    |||||||||||||||||||||| ||||||||||    
T  12126658 agagaggtcaaatttttcatctgtttggacaaa 12126690  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 366
Target Start/End: Complemental strand, 41900553 - 41900496
Alignment:
Q  309 ttcgaaacaagtaagagaggtcaaatttttcatctttttggacaaagctcggaaccca 366  Q
    |||| ||||||| |||||||||||| || | ||||||||||| |||||||| ||||||    
T  41900553 ttcgtaacaagtgagagaggtcaaagttgtaatctttttggaaaaagctcgaaaccca 41900496  T

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