View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11516_high_8 (Length: 502)

Name: NF11516_high_8
Description: NF11516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11516_high_8
NF11516_high_8
[»] chr5 (3 HSPs)
chr5 (234-494)||(28532769-28533029)
chr5 (118-236)||(28533069-28533187)
chr5 (403-448)||(41900503-41900548)
[»] chr3 (3 HSPs)
chr3 (118-228)||(51763081-51763191)
chr3 (392-450)||(51763388-51763446)
chr3 (392-449)||(51113195-51113252)
[»] chr6 (12 HSPs)
chr6 (160-234)||(6587982-6588056)
chr6 (392-450)||(6593929-6593987)
chr6 (265-362)||(6588144-6588241)
chr6 (392-448)||(6423907-6423963)
chr6 (393-446)||(6410699-6410752)
chr6 (104-150)||(14810035-14810081)
chr6 (392-446)||(19633104-19633158)
chr6 (393-450)||(6417092-6417149)
chr6 (400-449)||(6596241-6596290)
chr6 (391-432)||(7132323-7132364)
chr6 (391-432)||(7135246-7135287)
chr6 (391-432)||(7138169-7138210)
[»] chr4 (5 HSPs)
chr4 (391-450)||(553759-553818)
chr4 (104-151)||(1537252-1537299)
chr4 (395-450)||(21833278-21833333)
chr4 (100-197)||(53759964-53760058)
chr4 (104-156)||(1547374-1547426)
[»] chr7 (6 HSPs)
chr7 (391-450)||(10615713-10615772)
chr7 (104-153)||(15091285-15091334)
chr7 (391-451)||(10169047-10169107)
chr7 (391-451)||(10176572-10176632)
chr7 (100-144)||(10167233-10167277)
chr7 (104-136)||(10616213-10616245)
[»] chr8 (2 HSPs)
chr8 (405-449)||(32151969-32152013)
chr8 (393-441)||(34935986-34936034)
[»] chr1 (2 HSPs)
chr1 (386-450)||(7555198-7555262)
chr1 (391-448)||(19467428-19467485)


Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 234 - 494
Target Start/End: Complemental strand, 28533029 - 28532769
Alignment:
Q  234 cctacgtagcctcttcaaaaggttcacccatctcaattccctcaatctctctcgctatctcggtcacaacctcgacgaccttctctgccaaatctctcgt 333  Q
    ||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||   |    
T  28533029 cctacttagcctcttcaaaaggttcacccatctcaatttcctcgatctctctcgctatctaggtaacaacctcgacgaccttctctgccaaatctcagat 28532930  T
Q  334 ttctcgtcgttcaaattcacttcactcaaactcccaaacgttggtaaccgcttcccagcaaatggattgcgagctttttcacaaaacattacaactttga 433  Q
    ||| |||| |||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28532929 ttcccgtcattcaaaatcatttcactcaaacttccaaacgttggtaaccgcttcccagcaaatggattgcgagctttttcacaaaacattacaactttga 28532830  T
Q  434 cctctttcacttgttccggctttgttaacctatttcttatcgcagaatgtttccctttgct 494  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28532829 cctctttcacttgttccggctttgttaacctatttcttatcgcagaatgtttccctttgct 28532769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 118 - 236
Target Start/End: Complemental strand, 28533187 - 28533069
Alignment:
Q  118 tgttgggaatgtatattcagattcatcatcaacgacggtatggacgaaaacaacaaccgtcgcagcttgagttctctctccaccgtatccaaacggttcc 217  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  28533187 tgttgggaatgtatcttcagattcatcatcaacgacggtatggacgaaaacaacaaccgtcgcaacttgagttctctctccaccgtatccaaacggttcc 28533088  T
Q  218 tctccatcaccggccgcct 236  Q
    ||||||||||||| |||||    
T  28533087 tctccatcaccggacgcct 28533069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 448
Target Start/End: Original strand, 41900503 - 41900548
Alignment:
Q  403 cgagctttttcacaaaacattacaactttgacctctttcacttgtt 448  Q
    |||||||||||  |||| |||||||||||||||||| |||||||||    
T  41900503 cgagctttttccaaaaagattacaactttgacctctctcacttgtt 41900548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 118 - 228
Target Start/End: Original strand, 51763081 - 51763191
Alignment:
Q  118 tgttgggaatgtatattcagattcatcatcaacgacggtatggacgaaaacaacaaccgtcgcagcttgagttctctctccaccgtatccaaacggttcc 217  Q
    |||||||||| ||| |||| ||||||||||||| | | |   |||||| | ||||||||||||| ||||| ||||||||||| ||| ||||||| |||||    
T  51763081 tgttgggaatctatcttcaaattcatcatcaacaatgatgatgacgaagaaaacaaccgtcgcaacttgaattctctctccatcgtttccaaacagttcc 51763180  T
Q  218 tctccatcacc 228  Q
    |||||||||||    
T  51763181 tctccatcacc 51763191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 392 - 450
Target Start/End: Original strand, 51763388 - 51763446
Alignment:
Q  392 caaatggattgcgagctttttcacaaaacattacaactttgacctctttcacttgttcc 450  Q
    ||||||| ||||||| |||||||||||| |||||||||||||| ||| |||||||||||    
T  51763388 caaatgggttgcgagttttttcacaaaagattacaactttgacatctctcacttgttcc 51763446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 392 - 449
Target Start/End: Original strand, 51113195 - 51113252
Alignment:
Q  392 caaatggattgcgagctttttcacaaaacattacaactttgacctctttcacttgttc 449  Q
    ||||||||||||||||||| ||  |||| ||||||||| |||||||| ||||||||||    
T  51113195 caaatggattgcgagctttctcggaaaatattacaactctgacctctctcacttgttc 51113252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 160 - 234
Target Start/End: Original strand, 6587982 - 6588056
Alignment:
Q  160 gacgaaaacaacaaccgtcgcagcttgagttctctctccaccgtatccaaacggttcctctccatcaccggccgc 234  Q
    ||||||||||||||||||| |||| ||| |||||||||| |||||||||| | ||||||| ||||||||| ||||    
T  6587982 gacgaaaacaacaaccgtcacagcatgatttctctctccgccgtatccaagcagttcctcgccatcaccgaccgc 6588056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 392 - 450
Target Start/End: Original strand, 6593929 - 6593987
Alignment:
Q  392 caaatggattgcgagctttttcacaaaacattacaactttgacctctttcacttgttcc 450  Q
    ||||||| ||||||| ||| |||||||| |||||||||||||||||||||| |||||||    
T  6593929 caaatggtttgcgagttttctcacaaaagattacaactttgacctctttcaattgttcc 6593987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 265 - 362
Target Start/End: Original strand, 6588144 - 6588241
Alignment:
Q  265 ctcaattccctcaatctctctcgctatctcggtcacaacctcgacgaccttctctgccaaatctctcgtttctcgtcgttcaaattcacttcactcaa 362  Q
    |||| ||||||||||||||| || |||  |||| |  |||||||||||||||| |||||||||||||||||| |  | || ||| |||||||||||||    
T  6588144 ctcacttccctcaatctctcgcgatatagcggttatgacctcgacgaccttctttgccaaatctctcgtttcccaacattgaaaatcacttcactcaa 6588241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 392 - 448
Target Start/End: Complemental strand, 6423963 - 6423907
Alignment:
Q  392 caaatggattgcgagctttttcacaaaacattacaactttgacctctttcacttgtt 448  Q
    ||||||| ||||||||||| || |||||||| ||||||||||||||| |||||||||    
T  6423963 caaatgggttgcgagctttctcccaaaacataacaactttgacctctctcacttgtt 6423907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 393 - 446
Target Start/End: Complemental strand, 6410752 - 6410699
Alignment:
Q  393 aaatggattgcgagctttttcacaaaacattacaactttgacctctttcacttg 446  Q
    |||||| |||| || ||| || ||||||||||||||||||||||||||||||||    
T  6410752 aaatgggttgcaagttttctcccaaaacattacaactttgacctctttcacttg 6410699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 150
Target Start/End: Complemental strand, 14810081 - 14810035
Alignment:
Q  104 atttacctgatgagtgttgggaatgtatattcagattcatcatcaac 150  Q
    ||||||||||||||||||||||| || | || |||||||||||||||    
T  14810081 atttacctgatgagtgttgggaacgtgtctttagattcatcatcaac 14810035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 392 - 446
Target Start/End: Complemental strand, 19633158 - 19633104
Alignment:
Q  392 caaatggattgcgagctttttcacaaaacattacaactttgacctctttcacttg 446  Q
    ||||||| ||||||||||| ||  ||| ||||||||||||||||||| |||||||    
T  19633158 caaatgggttgcgagctttctccgaaagcattacaactttgacctctctcacttg 19633104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 450
Target Start/End: Complemental strand, 6417149 - 6417092
Alignment:
Q  393 aaatggattgcgagctttttcacaaaacattacaactttgacctctttcacttgttcc 450  Q
    |||||| || |||||||| || ||||| | |||||||||||||||| |||||||||||    
T  6417149 aaatgggttacgagctttctcccaaaagaatacaactttgacctctctcacttgttcc 6417092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 449
Target Start/End: Original strand, 6596241 - 6596290
Alignment:
Q  400 ttgcgagctttttcacaaaacattacaactttgacctctttcacttgttc 449  Q
    ||||||| ||| || |||||||| ||||||||||||||| ||||||||||    
T  6596241 ttgcgagttttctcccaaaacataacaactttgacctctctcacttgttc 6596290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 432
Target Start/End: Complemental strand, 7132364 - 7132323
Alignment:
Q  391 gcaaatggattgcgagctttttcacaaaacattacaactttg 432  Q
    |||||||| ||||||||||| || ||||||||||||||||||    
T  7132364 gcaaatgggttgcgagctttctcccaaaacattacaactttg 7132323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 432
Target Start/End: Complemental strand, 7135287 - 7135246
Alignment:
Q  391 gcaaatggattgcgagctttttcacaaaacattacaactttg 432  Q
    |||||||| ||||||||||| || ||||||||||||||||||    
T  7135287 gcaaatgggttgcgagctttctcccaaaacattacaactttg 7135246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 432
Target Start/End: Complemental strand, 7138210 - 7138169
Alignment:
Q  391 gcaaatggattgcgagctttttcacaaaacattacaactttg 432  Q
    |||||||| ||||||||||| || ||||||||||||||||||    
T  7138210 gcaaatgggttgcgagctttctcccaaaacattacaactttg 7138169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 391 - 450
Target Start/End: Complemental strand, 553818 - 553759
Alignment:
Q  391 gcaaatggattgcgagctttttcacaaaacattacaactttgacctctttcacttgttcc 450  Q
    |||||||| ||||||||||| || |||||||||||||||||||||||| |||| ||||||    
T  553818 gcaaatgggttgcgagctttctcccaaaacattacaactttgacctctctcacctgttcc 553759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 104 - 151
Target Start/End: Original strand, 1537252 - 1537299
Alignment:
Q  104 atttacctgatgagtgttgggaatgtatattcagattcatcatcaacg 151  Q
    |||||||||||||||||||||||||| ||||||||||| ||| |||||    
T  1537252 atttacctgatgagtgttgggaatgtgtattcagattcctcaacaacg 1537299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 395 - 450
Target Start/End: Original strand, 21833278 - 21833333
Alignment:
Q  395 atggattgcgagctttttcacaaaacattacaactttgacctctttcacttgttcc 450  Q
    |||| ||||||| |||| ||||||||||||| |||||||||||| |||||||||||    
T  21833278 atgggttgcgagtttttgcacaaaacattactactttgacctctctcacttgttcc 21833333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 100 - 197
Target Start/End: Original strand, 53759964 - 53760058
Alignment:
Q  100 tcagatttacctgatgagtgttgggaatgtatattcagattcatcatcaacgacggtatggacgaaaacaacaaccgtcgcagcttgagttctctctc 197  Q
    |||||||||||||||||||| ||||||| ||| |||| | || |||||||| ||   | |||| ||||||||||||||| || ||||| |||||||||    
T  53759964 tcagatttacctgatgagtgctgggaatctatcttcaaactcgtcatcaacaac---aaggacaaaaacaacaaccgtcacaacttgaattctctctc 53760058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 104 - 156
Target Start/End: Original strand, 1547374 - 1547426
Alignment:
Q  104 atttacctgatgagtgttgggaatgtatattcagattcatcatcaacgacggt 156  Q
    |||||||||| ||||||||||||| ||| |||| ||||||||||| |||||||    
T  1547374 atttacctgacgagtgttgggaatctatcttcaaattcatcatcatcgacggt 1547426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 391 - 450
Target Start/End: Complemental strand, 10615772 - 10615713
Alignment:
Q  391 gcaaatggattgcgagctttttcacaaaacattacaactttgacctctttcacttgttcc 450  Q
    |||||||| || |||||||| || ||||| |||||||||||||||||| |||||||||||    
T  10615772 gcaaatgggttacgagctttctcccaaaagattacaactttgacctctctcacttgttcc 10615713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 104 - 153
Target Start/End: Original strand, 15091285 - 15091334
Alignment:
Q  104 atttacctgatgagtgttgggaatgtatattcagattcatcatcaacgac 153  Q
    ||||||| |||||||||||||||||  | |||||||||||||||||||||    
T  15091285 atttacccgatgagtgttgggaatgcgtcttcagattcatcatcaacgac 15091334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 391 - 451
Target Start/End: Original strand, 10169047 - 10169107
Alignment:
Q  391 gcaaatggattgcgagctttttcacaaaacattacaactttgacctctttcacttgttccg 451  Q
    |||||||| ||||||| ||| || ||||| |||| ||||||||||||| ||||||||||||    
T  10169047 gcaaatgggttgcgagttttctctcaaaatattagaactttgacctctctcacttgttccg 10169107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 391 - 451
Target Start/End: Original strand, 10176572 - 10176632
Alignment:
Q  391 gcaaatggattgcgagctttttcacaaaacattacaactttgacctctttcacttgttccg 451  Q
    |||||||| ||||||| ||| || ||||| |||| ||||||||||||| ||||||||||||    
T  10176572 gcaaatgggttgcgagttttctctcaaaatattagaactttgacctctctcacttgttccg 10176632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 100 - 144
Target Start/End: Original strand, 10167233 - 10167277
Alignment:
Q  100 tcagatttacctgatgagtgttgggaatgtatattcagattcatc 144  Q
    |||||||||||||| || ||||||||||  |||||||||||||||    
T  10167233 tcagatttacctgacgaatgttgggaattgatattcagattcatc 10167277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 104 - 136
Target Start/End: Complemental strand, 10616245 - 10616213
Alignment:
Q  104 atttacctgatgagtgttgggaatgtatattca 136  Q
    |||||||||||||||||||||||||||| ||||    
T  10616245 atttacctgatgagtgttgggaatgtatcttca 10616213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 405 - 449
Target Start/End: Complemental strand, 32152013 - 32151969
Alignment:
Q  405 agctttttcacaaaacattacaactttgacctctttcacttgttc 449  Q
    |||||| || |||||||||||||||||||||||| ||||||||||    
T  32152013 agctttctcccaaaacattacaactttgacctctctcacttgttc 32151969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 393 - 441
Target Start/End: Original strand, 34935986 - 34936034
Alignment:
Q  393 aaatggattgcgagctttttcacaaaacattacaactttgacctctttc 441  Q
    |||||| ||||||| ||| |||||||| |||||||||||||| ||||||    
T  34935986 aaatggtttgcgagttttctcacaaaatattacaactttgacatctttc 34936034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 386 - 450
Target Start/End: Complemental strand, 7555262 - 7555198
Alignment:
Q  386 tcccagcaaatggattgcgagctttttcacaaaacattacaactttgacctctttcacttgttcc 450  Q
    |||| |||| ||||||||||||||| || ||||| ||||||||||| |||||  |||||||||||    
T  7555262 tccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgttcc 7555198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 448
Target Start/End: Original strand, 19467428 - 19467485
Alignment:
Q  391 gcaaatggattgcgagctttttcacaaaacattacaactttgacctctttcacttgtt 448  Q
    |||||||| ||||||| |||  | ||||| |||||||||||||||||| |||||||||    
T  19467428 gcaaatgggttgcgagttttcactcaaaatattacaactttgacctctctcacttgtt 19467485  T

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