View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11516_low_10 (Length: 496)
Name: NF11516_low_10
Description: NF11516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11516_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-113; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 253 - 476
Target Start/End: Original strand, 36277472 - 36277695
Alignment:
| Q |
253 |
tccttagctatatggtgtcgaaccacttgaaagtccagtattgtctggagggaaacctggtgagccttccttcttattatttattactatagcaagcttc |
352 |
Q |
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| T |
36277472 |
tccttagctatatggtgtcgaaccacttgaaagtccagtattgtctggagggaaacctggtgagccttccttcttattatttatcactattgcaagcttc |
36277571 |
T |
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| Q |
353 |
attcatatcattgatcttaagttccctaatgcacattgagggaaagtatcacctttaccgatagtatcacctgctgacagtttatgtgccttgacgaatc |
452 |
Q |
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| T |
36277572 |
attcatatcattgatcttaagttccctaatgcacattgaggaaaagtatcacctttaccgatagtatcacctgctgacagtttatgtgccttgacgaatc |
36277671 |
T |
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| Q |
453 |
aaatgtgcaaatactgtcaccgat |
476 |
Q |
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| T |
36277672 |
aaatgtgcaaataccgtcaccgat |
36277695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 19 - 190
Target Start/End: Original strand, 36277238 - 36277409
Alignment:
| Q |
19 |
cagagatctggaaaagctctggcgggaaagttgatgcccttgtttctggtataggaaccggaggtacagtaacaggtgctggaaaatatttgaaagagca |
118 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36277238 |
cagagatctggaaaagctctggtgggaaagttgatgcccttgtttctggtataggaaccggaggtacagtaacaggtgctggaaaatatttgaaagagca |
36277337 |
T |
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| Q |
119 |
gaaccctgatattaaggttaggattatgattctttaactgtataacattaccttctataaatttctaggcat |
190 |
Q |
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| T |
36277338 |
gaaccctgatattaaggttaggattatgattctttaactgtataacattaccttctataaatttctaggcat |
36277409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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