View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11516_low_13 (Length: 380)
Name: NF11516_low_13
Description: NF11516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11516_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 297; Significance: 1e-167; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 17 - 362
Target Start/End: Original strand, 10823373 - 10823718
Alignment:
| Q |
17 |
agcagagaagaaaaggatagtgtttgctaaagcagcttcaagtttactaaacaaaccatagcacagttaccaatattaacagtaaacccttatgtttcac |
116 |
Q |
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| T |
10823373 |
agcagagaagaaaagaataatgtttgctaaagcagcttcaagtttactaaacaaaccatagcacagttaccaatattaacagtaaacccttatatttcag |
10823472 |
T |
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| Q |
117 |
atattaacctcannnnnnnctatcttaaaagagaaaagagaaataaaacgttaatatttcacatcatctatataatattaccctttttcaaaaacgtgga |
216 |
Q |
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| T |
10823473 |
acattaacctcatttttttctatcttaaaagagaaaagagaaataaaacgttaatatttcacatcatctatataatattaccctttttcaaaaacgtgga |
10823572 |
T |
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| Q |
217 |
aaagccaaatttcactgaagacataagacaaacaaaccagaagacaagtttccttatttttctcttagtatgaagaagtgtaaattaaggtacttggctc |
316 |
Q |
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| T |
10823573 |
aaagccaaatttcactgaagacataagacaaacaaaccagaagacaagtttccttatttttctctcagtatgaagaagtgtaaattaaggtacttggctc |
10823672 |
T |
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| Q |
317 |
tagctttcttgacaaaatgtaaaaatatatgagaaagggggatatg |
362 |
Q |
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| T |
10823673 |
tagctttcttggcaaaatgtaaaaatatatgagaaagggggatatg |
10823718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 38 - 128
Target Start/End: Complemental strand, 36143947 - 36143849
Alignment:
| Q |
38 |
gtttgctaaagcagcttcaagtttactaaacaaaccatagcacagttacc--------aatattaacagtaaacccttatgtttcacatattaacctca |
128 |
Q |
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| T |
36143947 |
gtttgctaaagcagcttcaagtttactaaacaaaccatagcacaattaccaactatgtaatattaacagcaaacccttgtgtttcagacattaacctca |
36143849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 148 - 204
Target Start/End: Complemental strand, 36143803 - 36143747
Alignment:
| Q |
148 |
agaaaagagaaataaaacgttaatatttcacatcatctatataatattacccttttt |
204 |
Q |
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| T |
36143803 |
agaaaagagaaagaaagcgttaatatttcacatcatatatataatattacccttttt |
36143747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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