View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11516_low_17 (Length: 349)
Name: NF11516_low_17
Description: NF11516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11516_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 72 - 331
Target Start/End: Original strand, 32861191 - 32861450
Alignment:
| Q |
72 |
attggcaattctgacgttggtgtggttaatgccagcatgtccaccaatgggagaggagtctggatttccagaaaagtctgctgttctgtacatggtagtg |
171 |
Q |
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| T |
32861191 |
attggcaattctgacgttggtgtggttaatgccagcatgtccaccaatgggagaggagtctggatttccagaaaagtctgctgttatgtacatggtagtg |
32861290 |
T |
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| Q |
172 |
aggttcagtagcaattccttgcaagtattgtgctttgattggatttaatttagaatccgaattgactgcatcatgaatttgttgcagcagggaatggtga |
271 |
Q |
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| T |
32861291 |
aggttcagtagcaattccttgcaagcattgtgctttgattggatttaatttaggatctgaattgactgcatcatgaatttgttgcagcagggaatggtga |
32861390 |
T |
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| Q |
272 |
gggttgaagatagccatgaaagatgatatggaaagtgcatctcaagtaagactaaccttt |
331 |
Q |
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| T |
32861391 |
gggttggagatagccatgaaagatgatatggaaagtgcatctcaagtaagactaaccttt |
32861450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 279 - 331
Target Start/End: Original strand, 32862182 - 32862234
Alignment:
| Q |
279 |
agatagccatgaaagatgatatggaaagtgcatctcaagtaagactaaccttt |
331 |
Q |
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| T |
32862182 |
agatagccatgaaagatgatatggaaagtgcatctcaagtaagactaaccttt |
32862234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 279 - 331
Target Start/End: Original strand, 32862966 - 32863018
Alignment:
| Q |
279 |
agatagccatgaaagatgatatggaaagtgcatctcaagtaagactaaccttt |
331 |
Q |
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| T |
32862966 |
agatagccatgaaagatgatatggaaagtgcatctcaagtaagactaaccttt |
32863018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 32861146 - 32861188
Alignment:
| Q |
1 |
gcttgttaacgtgggatgtattcagagacaagcttgtgaatat |
43 |
Q |
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| T |
32861146 |
gcttgttaacatgggatgtattcagagacaagcttgtgaatat |
32861188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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