View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11516_low_20 (Length: 328)
Name: NF11516_low_20
Description: NF11516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11516_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 18 - 321
Target Start/End: Original strand, 26606421 - 26606731
Alignment:
| Q |
18 |
aatatatggaaataaatgacatattttttctccttttcttcttttggttagtacattaccttttgaggattagaactactagtcattttctcacacaatt |
117 |
Q |
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| T |
26606421 |
aatatatggaaataaatgacatattttttctccttttcttcttttggctagtacattaccttttgaggattagaactactagtcattttctcacataatt |
26606520 |
T |
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| Q |
118 |
tggagggccattaagatggtgagtttataacgtggatgatgtctcaataatgcacgctttcannnnnnnnnccttttacttttgttctcccaaaagaaca |
217 |
Q |
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| T |
26606521 |
tggagggccattaagatggtgagtttataacgtggatgatgtctcaataatgcacgctttcatttttttttccttttacttttgttctcccaaaagaaca |
26606620 |
T |
|
| Q |
218 |
aaggaatttggag-------ataaataaattaggtaatgtttcacagttccattttctatataggtaaatgagattgattcacaatcaaatagatctgaa |
310 |
Q |
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||| ||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
26606621 |
aagaaatttagagattaaatataaataaattaggcaatgtttcacagttccattttctatataggtaaatgagattgattcaaaatcaaatagatctgaa |
26606720 |
T |
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| Q |
311 |
tgcctatgcta |
321 |
Q |
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| T |
26606721 |
tgcctatgcta |
26606731 |
T |
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