View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11516_low_21 (Length: 327)

Name: NF11516_low_21
Description: NF11516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11516_low_21
NF11516_low_21
[»] chr6 (3 HSPs)
chr6 (43-281)||(33217122-33217353)
chr6 (49-110)||(3180989-3181050)
chr6 (53-98)||(32171560-32171605)
[»] chr1 (5 HSPs)
chr1 (55-101)||(5924108-5924154)
chr1 (54-101)||(27807209-27807256)
chr1 (49-110)||(15361802-15361861)
chr1 (48-99)||(44815234-44815285)
chr1 (43-99)||(31517671-31517727)
[»] chr8 (3 HSPs)
chr8 (49-108)||(2364382-2364441)
chr8 (49-105)||(37353097-37353153)
chr8 (54-101)||(14926911-14926958)
[»] chr2 (6 HSPs)
chr2 (43-94)||(34927046-34927097)
chr2 (49-100)||(43456637-43456688)
chr2 (43-97)||(17443541-17443595)
chr2 (43-101)||(32821892-32821950)
chr2 (53-101)||(15370252-15370300)
chr2 (53-97)||(19243626-19243670)
[»] chr5 (1 HSPs)
chr5 (67-101)||(34205348-34205382)
[»] chr4 (3 HSPs)
chr4 (49-99)||(21157857-21157907)
chr4 (49-99)||(28615613-28615663)
chr4 (54-98)||(30770983-30771027)
[»] chr3 (2 HSPs)
chr3 (43-105)||(20669701-20669763)
chr3 (51-100)||(21872225-21872274)
[»] chr7 (1 HSPs)
chr7 (53-101)||(48157049-48157097)


Alignment Details
Target: chr6 (Bit Score: 196; Significance: 1e-106; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 43 - 281
Target Start/End: Original strand, 33217122 - 33217353
Alignment:
Q  43 ataaattcttccaaacagtcttacaaatgcttatgtctgtaaataagttcaaataagtcgatcaaaatgcgctcttagtagttttttgttattaatatta 142  Q
    |||||||||||||||||||||||||||||      |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33217122 ataaattcttccaaacagtcttacaaatg------tctgtaaataagtttaaataagtcgatcaaaatgcgctcttagtagttttttgttattaatatta 33217215  T
Q  143 tatcatgttttacttgtctaaatattataccactttcattgttgatttactgtccctagatttttctaatatttgtgtgtgctaataaagtgttgaaaag 242  Q
    |||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33217216 tatcatgttttacttgtctaaatattttaccactat-attgttgatttactgtccctagatttttctaatatttgtgtgtgctaataaagtgttgaaaag 33217314  T
Q  243 caagaagaaaatgagatgattgagagcaagattagatga 281  Q
    |||||||||||||||||||||||||||||||||||||||    
T  33217315 caagaagaaaatgagatgattgagagcaagattagatga 33217353  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 49 - 110
Target Start/End: Complemental strand, 3181050 - 3180989
Alignment:
Q  49 tcttccaaacagtcttacaaatgcttatgtctgtaaataagttcaaataagtcgatcaaaat 110  Q
    |||| |||| ||||| |||| |||||||||||||| ||||||||||||||||| | ||||||    
T  3181050 tctttcaaatagtctcacaagtgcttatgtctgtagataagttcaaataagtcaaccaaaat 3180989  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 32171560 - 32171605
Alignment:
Q  53 ccaaacagtcttacaaatgcttatgtctgtaaataagttcaaataa 98  Q
    |||| |||||| ||||||||||||||| ||||||||||||||||||    
T  32171560 ccaaccagtctcacaaatgcttatgtcagtaaataagttcaaataa 32171605  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 5924108 - 5924154
Alignment:
Q  55 aaacagtcttacaaatgcttatgtctgtaaataagttcaaataagtc 101  Q
    |||||||||||||||||| |||||| |||||||||||||||||||||    
T  5924108 aaacagtcttacaaatgcgtatgtcagtaaataagttcaaataagtc 5924154  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 101
Target Start/End: Original strand, 27807209 - 27807256
Alignment:
Q  54 caaacagtcttacaaatgcttatgtctgtaaataagttcaaataagtc 101  Q
    |||||||||||||||||||||||||| ||| | |||||||||||||||    
T  27807209 caaacagtcttacaaatgcttatgtcagtagaaaagttcaaataagtc 27807256  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 110
Target Start/End: Original strand, 15361802 - 15361861
Alignment:
Q  49 tcttccaaacagtcttacaaatgcttatgtctgtaaataagttcaaataagtcgatcaaaat 110  Q
    ||||| ||||||||  ||||||||||||| | ||||||||||||||||||||||||| ||||    
T  15361802 tcttctaaacagtc--acaaatgcttatgacagtaaataagttcaaataagtcgatccaaat 15361861  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 48 - 99
Target Start/End: Complemental strand, 44815285 - 44815234
Alignment:
Q  48 ttcttccaaacagtcttacaaatgcttatgtctgtaaataagttcaaataag 99  Q
    |||||||| | ||||| ||||||||||||||| ||| |||||||||||||||    
T  44815285 ttcttccacaaagtctcacaaatgcttatgtcagtagataagttcaaataag 44815234  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 99
Target Start/End: Complemental strand, 31517727 - 31517671
Alignment:
Q  43 ataaattcttccaaacagtcttacaaatgcttatgtctgtaaataagttcaaataag 99  Q
    |||| |||| ||||||||||| |||| |||||||| | ||||||||| |||||||||    
T  31517727 ataagttctcccaaacagtctcacaagtgcttatgccagtaaataagctcaaataag 31517671  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 108
Target Start/End: Complemental strand, 2364441 - 2364382
Alignment:
Q  49 tcttccaaacagtcttacaaatgcttatgtctgtaaataagttcaaataagtcgatcaaa 108  Q
    ||||||||||||||| |||| | |||||||| | | ||||||||||||||||||||||||    
T  2364441 tcttccaaacagtctcacaagtacttatgtcagaagataagttcaaataagtcgatcaaa 2364382  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 37353153 - 37353097
Alignment:
Q  49 tcttccaaacagtcttacaaatgcttatgtctgtaaataagttcaaataagtcgatc 105  Q
    ||||||||||||||| |||| |||||||||| ||| ||| ||||| |||||||||||    
T  37353153 tcttccaaacagtctcacaagtgcttatgtcagtagataggttcagataagtcgatc 37353097  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 101
Target Start/End: Complemental strand, 14926958 - 14926911
Alignment:
Q  54 caaacagtcttacaaatgcttatgtctgtaaataagttcaaataagtc 101  Q
    |||||||||| |||| |||||||| | |||||||||||||||||||||    
T  14926958 caaacagtctcacaagtgcttatgccagtaaataagttcaaataagtc 14926911  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 43 - 94
Target Start/End: Original strand, 34927046 - 34927097
Alignment:
Q  43 ataaattcttccaaacagtcttacaaatgcttatgtctgtaaataagttcaa 94  Q
    |||| |||||||||||||||||| || |||||||||| ||||||||| ||||    
T  34927046 ataagttcttccaaacagtcttataagtgcttatgtcagtaaataagctcaa 34927097  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 49 - 100
Target Start/End: Complemental strand, 43456688 - 43456637
Alignment:
Q  49 tcttccaaacagtcttacaaatgcttatgtctgtaaataagttcaaataagt 100  Q
    |||| ||||||||||||||| || ||||||  ||||||||||||||||||||    
T  43456688 tctttcaaacagtcttacaagtgtttatgtgagtaaataagttcaaataagt 43456637  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 17443595 - 17443541
Alignment:
Q  43 ataaattcttccaaacagtcttacaaatgcttatgtctgtaaataagttcaaata 97  Q
    ||||| ||||||||||||||| |||| ||||||| || ||| |||||||||||||    
T  17443595 ataaactcttccaaacagtctcacaagtgcttatatcagtatataagttcaaata 17443541  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 101
Target Start/End: Original strand, 32821892 - 32821950
Alignment:
Q  43 ataaattcttccaaacagtcttacaaatgcttatgtctgtaaataagttcaaataagtc 101  Q
    ||||| |||||||||||||||| |||||||||| ||  ||| ||||| |||||||||||    
T  32821892 ataaactcttccaaacagtcttgcaaatgcttacgttggtagataagctcaaataagtc 32821950  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 15370300 - 15370252
Alignment:
Q  53 ccaaacagtcttacaaatgcttatgtctgtaaataagttcaaataagtc 101  Q
    ||||||||||| ||||||||||||| | ||| ||||| |||||||||||    
T  15370300 ccaaacagtctcacaaatgcttatgccagtagataagctcaaataagtc 15370252  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 97
Target Start/End: Original strand, 19243626 - 19243670
Alignment:
Q  53 ccaaacagtcttacaaatgcttatgtctgtaaataagttcaaata 97  Q
    ||||||||||| | ||||||||||||| ||| |||||||||||||    
T  19243626 ccaaacagtctcagaaatgcttatgtcagtagataagttcaaata 19243670  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 101
Target Start/End: Original strand, 34205348 - 34205382
Alignment:
Q  67 aaatgcttatgtctgtaaataagttcaaataagtc 101  Q
    ||||||||||||| |||||||||||||||||||||    
T  34205348 aaatgcttatgtcagtaaataagttcaaataagtc 34205382  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 99
Target Start/End: Original strand, 21157857 - 21157907
Alignment:
Q  49 tcttccaaacagtcttacaaatgcttatgtctgtaaataagttcaaataag 99  Q
    |||||||||||||||||||| |||||||||| ||| || || |||||||||    
T  21157857 tcttccaaacagtcttacaagtgcttatgtcagtagatgagctcaaataag 21157907  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 99
Target Start/End: Original strand, 28615613 - 28615663
Alignment:
Q  49 tcttccaaacagtcttacaaatgcttatgtctgtaaataagttcaaataag 99  Q
    ||||| |||||||||||||||||||||||||  || ||||| |||||||||    
T  28615613 tcttcgaaacagtcttacaaatgcttatgtcattagataagctcaaataag 28615663  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 98
Target Start/End: Original strand, 30770983 - 30771027
Alignment:
Q  54 caaacagtcttacaaatgcttatgtctgtaaataagttcaaataa 98  Q
    |||||||||||||||||||||||||| ||  |||| |||||||||    
T  30770983 caaacagtcttacaaatgcttatgtcagtggataaattcaaataa 30771027  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 105
Target Start/End: Original strand, 20669701 - 20669763
Alignment:
Q  43 ataaattcttccaaacagtcttacaaatgcttatgtctgtaaataagttcaaataagtcgatc 105  Q
    |||| |||||||||||||||| | | ||| ||||||| ||||||||| ||| |||||||||||    
T  20669701 ataagttcttccaaacagtctaaaatatgtttatgtcagtaaataagctcagataagtcgatc 20669763  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 100
Target Start/End: Complemental strand, 21872274 - 21872225
Alignment:
Q  51 ttccaaacagtcttacaaatgcttatgtctgtaaataagttcaaataagt 100  Q
    ||||||||||||| |||| |||||||||| ||| ||||| ||||||||||    
T  21872274 ttccaaacagtctcacaagtgcttatgtcagtagataagatcaaataagt 21872225  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 48157097 - 48157049
Alignment:
Q  53 ccaaacagtcttacaaatgcttatgtctgtaaataagttcaaataagtc 101  Q
    ||||||||||| |||||||||||  || ||||||||| |||||||||||    
T  48157097 ccaaacagtctcacaaatgcttaaatcagtaaataagctcaaataagtc 48157049  T

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