View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11516_low_22 (Length: 316)
Name: NF11516_low_22
Description: NF11516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11516_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 17 - 311
Target Start/End: Original strand, 26638285 - 26638579
Alignment:
| Q |
17 |
gaaaacaaggcttggatccttaaagaaggtagcaataagtgcatcttctaagttcaaacattccttcaagaaggggcgaaggcacaacagggttatatct |
116 |
Q |
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| T |
26638285 |
gaaaacaaggcttggatccttaaagaaggtagcaataagtgcatcttctaagttcaaacattccttcaagaaggggcgaaggcacaacagggttatatct |
26638384 |
T |
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| Q |
117 |
gtcatcgaggatgaaatcgatacagaagagttgcaggcaatcgatgcttttcgtcaagcacttatcctagaagaactattaccctcaaaacatgatgatc |
216 |
Q |
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| T |
26638385 |
gtcttcgaggatgaaatcgatacagaagagttgcaggcaatcgatgcttttcgtcaagcacttatcctagaagaactattaccctcaaaacatgatgatc |
26638484 |
T |
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| Q |
217 |
atcatatgatgctaaggtagcccttgagactcatatagttaatagctgcagcattaccttatgctttgattagacagttcttgatgtgctattat |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26638485 |
atcatatgatgctaaggtagcccttgagactcatatagttaatagctgcagcattaccttatgctttgattagacagttcttgatgtgctattat |
26638579 |
T |
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Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 139 - 235
Target Start/End: Original strand, 54771673 - 54771769
Alignment:
| Q |
139 |
cagaagagttgcaggcaatcgatgcttttcgtcaagcacttatcctagaagaactattaccctcaaaacatgatgatcatcatatgatgctaaggta |
235 |
Q |
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|||||||||| |||||| | |||||| |||| ||| |||||||| | ||||| || ||||||||||| |||||||||| |||||||||||||||||| |
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| T |
54771673 |
cagaagagttacaggcagttgatgctcttcgacaaacacttatcttggaagagctcttaccctcaaagcatgatgatcctcatatgatgctaaggta |
54771769 |
T |
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