View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11516_low_23 (Length: 298)
Name: NF11516_low_23
Description: NF11516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11516_low_23 |
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| [»] scaffold0236 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 19 - 287
Target Start/End: Complemental strand, 43704126 - 43703858
Alignment:
| Q |
19 |
ccattgccaatccagaaagggaagaagcaacactagacatactctttggaaactctttgtaataaaactcattctggccaataacattgaacatttctgc |
118 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43704126 |
ccattgccaatccagaaagggaagcagcaacactagacatactctttggaaactctttgtaataaaactcattctggccaataacattgaacatttctgc |
43704027 |
T |
|
| Q |
119 |
tataccagccaaacaaagttgaggtgcaagccacattgcagacattttcaacactccatgagtatcattcaaatatccttctttgattgcttcctttctc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43704026 |
tataccagccaaacaaagttgaggtgcaagccacattgcagacattttcaacactccatgagtatcattcaaatatccttctttgattgcttcctttctc |
43703927 |
T |
|
| Q |
219 |
cttacagtctcaaaaattgctgcagttatcaagtgaagaaaattaaaaaacaacccaattcccattctt |
287 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43703926 |
cttacagtctcaaaaattgctgcagttatcaagtgaagaaaattaaaaaacaacccaattcccattctt |
43703858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 19 - 287
Target Start/End: Complemental strand, 43715097 - 43714829
Alignment:
| Q |
19 |
ccattgccaatccagaaagggaagaagcaacactagacatactctttggaaactctttgtaataaaactcattctggccaataacattgaacatttctgc |
118 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43715097 |
ccattgccaatccagaaagggaagcagcaacactagacatactctttggaaactctttgtaataaaactcattctggccaataacattgaacatttctgc |
43714998 |
T |
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| Q |
119 |
tataccagccaaacaaagttgaggtgcaagccacattgcagacattttcaacactccatgagtatcattcaaatatccttctttgattgcttcctttctc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43714997 |
tataccagccaaacaaagttgaggtgcaagccacattgcagacattttcaacactccatgagtatcattcaaatatccttctttgattgcttcctttctc |
43714898 |
T |
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| Q |
219 |
cttacagtctcaaaaattgctgcagttatcaagtgaagaaaattaaaaaacaacccaattcccattctt |
287 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43714897 |
cttacagtctcaaaaattgctgcagttatcaagtgaagaaaattaaaaaacaacccaattcccattctt |
43714829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 19 - 287
Target Start/End: Complemental strand, 43687268 - 43687000
Alignment:
| Q |
19 |
ccattgccaatccagaaagggaagaagcaacactagacatactctttggaaactctttgtaataaaactcattctggccaataacattgaacatttctgc |
118 |
Q |
| |
|
||||||||||||||||||| | ||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||| || |
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| T |
43687268 |
ccattgccaatccagaaagtgcagaagaaacactagacatagtctttggaaactctttgtaataaaactcattttggccaataacattgaatgcttcagc |
43687169 |
T |
|
| Q |
119 |
tataccagccaaacaaagttgaggtgcaagccacattgcagacattttcaacactccatgagtatcattcaaatatccttctttgattgcttcctttctc |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| | | ||||||| ||||||| |
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| T |
43687168 |
tataccagccaaacaaagttgaggtgcaagccacattgcagacattttcaacactccatgagtattattcaaaaatcctgcctgtattgctttctttctc |
43687069 |
T |
|
| Q |
219 |
cttacagtctcaaaaattgctgcagttatcaagtgaagaaaattaaaaaacaacccaattcccattctt |
287 |
Q |
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|||| | ||||||||||||||||| || | |||||||||||||||||||||||||| |||||||||| |
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| T |
43687068 |
cttatactctcaaaaattgctgcaactacaatgtgaagaaaattaaaaaacaacccaagtcccattctt |
43687000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 19 - 287
Target Start/End: Complemental strand, 43728831 - 43728563
Alignment:
| Q |
19 |
ccattgccaatccagaaagggaagaagcaacactagacatactctttggaaactctttgtaataaaactcattctggccaataacattgaacatttctgc |
118 |
Q |
| |
|
||||| |||||||| ||||||||| || || |||||||||| || | ||||||||||||||||| || ||||| ||||||||| ||||||| ||| |
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| T |
43728831 |
ccattcccaatccacaaagggaagcagaaatactagacatagtcctcggaaactctttgtaatagaattcattttggccaatagcattgaatgcttcgct |
43728732 |
T |
|
| Q |
119 |
tataccagccaaacaaagttgaggtgcaagccacattgcagacattttcaacactccatgagtatcattcaaatatccttctttgattgcttcctttctc |
218 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||| | | ||||||| |||||| |
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| T |
43728731 |
tataccacccaaacaaagttgaggtgcaagccacaatgcagacattttcaacacgccatgagtatcattcaaaaatcctgcctgaattgctttttttctc |
43728632 |
T |
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| Q |
219 |
cttacagtctcaaaaattgctgcagttatcaagtgaagaaaattaaaaaacaacccaattcccattctt |
287 |
Q |
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|||| | |||||||| |||||||||| |||||| |||||||| |||||||||||||||||||||||| |
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| T |
43728631 |
cttatactctcaaaagcagctgcagttaccaagtggagaaaatttaaaaacaacccaattcccattctt |
43728563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 177
Target Start/End: Complemental strand, 25274203 - 25274045
Alignment:
| Q |
19 |
ccattgccaatccagaaagggaagaagcaacactagacatactctttggaaactctttgtaataaaactcattctggccaataacattgaacatttctgc |
118 |
Q |
| |
|
||||| ||||||||||||| |||| || |||||||||||| | ||||||||||| |||||||||||||||| ||||| || | ||||| ||| | |
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| T |
25274203 |
ccattcccaatccagaaagcgaagcggcgacactagacatagtacttggaaactctgtgtaataaaactcattttggcctatgaaattgactgcttcaga |
25274104 |
T |
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| Q |
119 |
tataccagccaaacaaagttgaggtgcaagccacattgcagacattttcaacactccat |
177 |
Q |
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||||||||| | ||||||||||||||||||||||| ||| ||||||| ||||||||||| |
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| T |
25274103 |
tataccagctagacaaagttgaggtgcaagccacaatgccgacatttccaacactccat |
25274045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 287
Target Start/End: Complemental strand, 25274032 - 25273959
Alignment:
| Q |
214 |
ttctccttacagtctcaaaaattgctgcagttatcaagtgaagaaaattaaaaaacaacccaattcccattctt |
287 |
Q |
| |
|
||||||||| |||||||||||| |||||| ||| | ||| |||||| |||||||| ||||||||||||||| |
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| T |
25274032 |
ttctccttatagtctcaaaaatcgctgcatttaccgagtagagaaaagataaaaacaaaccaattcccattctt |
25273959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0236 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: scaffold0236
Description:
Target: scaffold0236; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 177
Target Start/End: Original strand, 23525 - 23683
Alignment:
| Q |
19 |
ccattgccaatccagaaagggaagaagcaacactagacatactctttggaaactctttgtaataaaactcattctggccaataacattgaacatttctgc |
118 |
Q |
| |
|
||||| ||||||||||||| |||| ||| |||||||||||| | ||||||||||| |||||||||||||||| ||||| || | |||| ||| | |
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| T |
23525 |
ccattcccaatccagaaagcgaagcagcgacactagacatagtacttggaaactctgtgtaataaaactcattttggcctatgaatttgactgcttcaga |
23624 |
T |
|
| Q |
119 |
tataccagccaaacaaagttgaggtgcaagccacattgcagacattttcaacactccat |
177 |
Q |
| |
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||||||||||| ||| ||||||||||||||||||| ||| || |||| ||| ||||||| |
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| T |
23625 |
tataccagccagacagagttgaggtgcaagccacaatgccgaaatttccaaaactccat |
23683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0236; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 287
Target Start/End: Original strand, 23696 - 23769
Alignment:
| Q |
214 |
ttctccttacagtctcaaaaattgctgcagttatcaagtgaagaaaattaaaaaacaacccaattcccattctt |
287 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||| ||||| |||||| |||||||| ||||||||||||||| |
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|
| T |
23696 |
ttctccttatagtctcaaaaattgctgcatttactaagtggagaaaagataaaaacaaaccaattcccattctt |
23769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 54 - 287
Target Start/End: Complemental strand, 2690833 - 2690600
Alignment:
| Q |
54 |
gacatactctttggaaactctttgtaataaaactcattctggccaataacattgaacatttctgctataccagccaaacaaagttgaggtgcaagccaca |
153 |
Q |
| |
|
|||||| |||| ||||| || |||| || |||||||| ||||| ||||||||||| ||| ||||| ||| |||| ||||||||||| |||||||| |
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| T |
2690833 |
gacatagtcttgggaaattcggtgtagtagaactcattttggcctataacattgaatgcttcagctattccacccaagcaaagttgaggaaaaagccaca |
2690734 |
T |
|
| Q |
154 |
ttgcagacattttcaacactccatgagtatcattcaaatatccttctttgattgcttcctttctccttacagtctcaaaaattgctgcagttatcaagtg |
253 |
Q |
| |
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|||||||||| ||||||||| ||||| |||||| ||||||||| ||||||||| ||| ||||| |||||| | ||||| ||| |||| |||||| |
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| T |
2690733 |
ttgcagacatgttcaacactgaatgaggatcattaccatatccttcattgattgctcttcttcgccttatagtctcgacaattgatgcggttaccaagtg |
2690634 |
T |
|
| Q |
254 |
aagaaaattaaaaaacaacccaattcccattctt |
287 |
Q |
| |
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|||||| |||||||| || | |||||||||| |
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| T |
2690633 |
gagaaaagagaaaaacaatccgagtcccattctt |
2690600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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