View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11516_low_24 (Length: 293)
Name: NF11516_low_24
Description: NF11516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11516_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 17 - 277
Target Start/End: Complemental strand, 33857019 - 33856759
Alignment:
| Q |
17 |
gaatcaaaataaatctggtataataggaattaattaatcgatagagatttcaaatgtatgaatagtgaaaatagaactcaattcaaaaaagcccataacc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33857019 |
gaatcaaaataaatctggtataataggaattaattaattgatagagatttcaaatgtatgaatagtgaaaatagaactcaattcaaaaaagcccataacc |
33856920 |
T |
|
| Q |
117 |
caaagtcaacccactaatcaatttcaacggaacaatccgaaaatttcgtcttcccgcttccccccactatctcaaaatttaagcgcctttccttaattac |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33856919 |
caaagtcaacccactaatcaatttcaacggaacaatccgaaaatttcgtcttcccgcttccccccactatctcaaaatttaagcgcctttccttaattac |
33856820 |
T |
|
| Q |
217 |
ttttcccactttctttatatttcccaaaaccctctatctctcaatcaattcacctcgtttc |
277 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33856819 |
ttttcccactttctttatatttcccaaaaccctctatctctcaatcaattcacctcgtttc |
33856759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 108 - 227
Target Start/End: Original strand, 26141646 - 26141766
Alignment:
| Q |
108 |
cccataacccaaagtcaacccac-taatcaatttcaa-cggaacaatccgaaaatttcgtcttcccgcttccccccactatctcaaaatttaagcgcc-t |
204 |
Q |
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||||||| ||||||||||||||| ||||||||| ||| || || ||||| ||||||||| || |||||| ||| || ||||||| ||||||||| || | |
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| T |
26141646 |
cccataaaccaaagtcaacccacgtaatcaattccaaccgtaaaaatcctaaaatttcg--tttccgctttccctcattatctcagaatttaagcacctt |
26141743 |
T |
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| Q |
205 |
ttccttaattacttttcccactt |
227 |
Q |
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||||||| ||| |||||||||| |
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| T |
26141744 |
ttccttatatacctttcccactt |
26141766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 102 - 164
Target Start/End: Original strand, 31489506 - 31489569
Alignment:
| Q |
102 |
aaaaagcccataacccaaagtcaacccac-taatcaatttcaacggaacaatccgaaaatttcg |
164 |
Q |
| |
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||||||||||||| ||||||||||||||| ||||||||| |||| | | ||||| ||||||||| |
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| T |
31489506 |
aaaaagcccataaaccaaagtcaacccacgtaatcaattccaaccgtaaaatcctaaaatttcg |
31489569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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