View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11516_low_25 (Length: 292)
Name: NF11516_low_25
Description: NF11516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11516_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 7 - 291
Target Start/End: Original strand, 36276975 - 36277259
Alignment:
| Q |
7 |
gagagaagaaccattcttcgcgcatttggtgctgagttagttctcacagatccagctaaaggcatgaaaggagctgttcagaaagccgaagagatactag |
106 |
Q |
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| T |
36276975 |
gagagaagaaccattcttcgcgcatttggtgctgagttagttctcacagatccagctaaaggcatgaaaggagctgttcagaaagccgaagagatactag |
36277074 |
T |
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| Q |
107 |
caaagactcccaatgcgtacattcttcagcaatttgaaaatcctgcaaacccaaaggtgttagtcgtttcaatgtgttatttttagagaatcacttggtt |
206 |
Q |
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| T |
36277075 |
caaagactcccaatgcttacattcttcagcaatttgaaaatcctgcaaacccaaaggtgttagtcgtgtcaatgtgttgtttttagagaatcacttggtt |
36277174 |
T |
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| Q |
207 |
gaagtgaattaactaactcattctcttccacctacttttaggttcactatgaaactactggaccagagatctggaaaagctctgg |
291 |
Q |
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| T |
36277175 |
gaagtgaattaactaactcattctcttccacctacttttaggttcactatgaaactactggaccagagatctggaaaagctctgg |
36277259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 10 - 164
Target Start/End: Complemental strand, 46937386 - 46937232
Alignment:
| Q |
10 |
agaagaaccattcttcgcgcatttggtgctgagttagttctcacagatccagctaaaggcatgaaaggagctgttcagaaagccgaagagatactagcaa |
109 |
Q |
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| T |
46937386 |
agaagaaccattcttctatcttttggagctgagttggttctgacagatcctgcaaagggaatgaaaggggcagttcagaaagctgaagagatattaaccg |
46937287 |
T |
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| Q |
110 |
agactcccaatgcgtacattcttcagcaatttgaaaatcctgcaaacccaaaggt |
164 |
Q |
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| T |
46937286 |
agactccaaatgcctatatccttcagcaatttgaaaaccccgccaatccaaaggt |
46937232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 70 - 152
Target Start/End: Original strand, 862382 - 862464
Alignment:
| Q |
70 |
atgaaaggagctgttcagaaagccgaagagatactagcaaagactcccaatgcgtacattcttcagcaatttgaaaatcctgc |
152 |
Q |
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| T |
862382 |
atgaaaggagctgttcagaaagctgaagagctgttggctaagacacccaatgcctacatacttcaacaatttgaaaaccctgc |
862464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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