View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11516_low_27 (Length: 271)
Name: NF11516_low_27
Description: NF11516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11516_low_27 |
 | |
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| [»] chr4 (7 HSPs) |
| |
|
| [»] scaffold0406 (1 HSPs) |
| | |
|
| [»] scaffold0373 (1 HSPs) |
| | |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 9 - 271
Target Start/End: Original strand, 28787658 - 28787919
Alignment:
| Q |
9 |
agaccaataacaaatattatggcaagaggtgacacaaatttactattatagtggatgtaacacctgtcaaattgatcaactatgaagagtatcaatgcag |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28787658 |
agaccaataacaaatattatggcaagaggtgacacaaatttactgttatagtggatgtaacacctgtcaaattgatcaactatgaagagtatcaatgcag |
28787757 |
T |
|
| Q |
109 |
gagatgatatcacaaatctatgttcgagcaactaggtactacaattggagtttttgaaatatgcatcaaggaggagtgttgaaattgatacatattttta |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |
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|
| T |
28787758 |
gagatgatatcacaaatctatgttcgagcaactaggtactacaattggagtttttgaaa-atgcatcaaggaggagtgttgaaattgatacatatttcta |
28787856 |
T |
|
| Q |
209 |
gaacattttagttaaaataatgacaatttatattattgtctcgattaagttgtagcttagaaa |
271 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
28787857 |
gaacattccagttaaaataatgacaatttatattattgtctcgattaagttgtagcctagaaa |
28787919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 13 - 191
Target Start/End: Complemental strand, 6824285 - 6824104
Alignment:
| Q |
13 |
caataacaaatattatggcaagaggtgacacaaatttactattatagtggatgtaacacctgtcaaattgatcaactatgaagagtatcaatgca---gg |
109 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| |||| || ||||| ||||||||||||||||||||||||||||||||| |||||||| || |
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|
| T |
6824285 |
caataacaaatattatggcaagaggtggcacaaattctctatcatggtggagctaacacctgtcaaattgatcaactatgaagagtttcaatgcaggagg |
6824186 |
T |
|
| Q |
110 |
agatgatatcacaaatctatgttcgagcaactaggtactacaattggagtttttgaaatatgcatcaaggaggagtgttgaa |
191 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||| |||||||| ||| |||||| |||||||||||||||||||||||||||| |
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|
| T |
6824185 |
agatgataacacaaatctatgtttgagcaactacgtactacatttgaagttttcgaaatatgcatcaaggaggagtgttgaa |
6824104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 9 - 193
Target Start/End: Complemental strand, 17525927 - 17525746
Alignment:
| Q |
9 |
agaccaataacaaatattatggcaagaggtgacacaaatttactattatagtggatgtaacacctgtcaaattgatcaactatgaagagtatcaatgca- |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| |||| || || ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17525927 |
agaccaataacaaatattatggcaagaggtggcacaaatttcctatcatggt------aacacctgtcaaattgatcaactatgaagagtatcaatgcaa |
17525834 |
T |
|
| Q |
108 |
--ggagatgatatcacaaatctatgttcgagcaactaggtactacaattggagtttttgaaatatgcatcaaggaggagtgttgaaat |
193 |
Q |
| |
|
|||||||||| | ||||||||||| ||||||||| |||||||| ||| |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
17525833 |
gaggagatgatagcgaaaatctatgtttgagcaactacgtactacatttgaagttttcgaaatatgcatcaaggaggagtgttgaaat |
17525746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 87 - 193
Target Start/End: Original strand, 24855980 - 24856089
Alignment:
| Q |
87 |
actatgaagagtatcaatgca---ggagatgatatcacaaatctatgttcgagcaactaggtactacaattggagtttttgaaatatgcatcaaggagga |
183 |
Q |
| |
|
||||| ||||||||||||||| |||||||||| |||||||||||||| | ||||||| |||||||| || || |||| ||||||||||||||| |||| |
|
|
| T |
24855980 |
actatcaagagtatcaatgcatgaggagatgataacacaaatctatgtttgtgcaactatgtactacatttagaattttcgaaatatgcatcaagaagga |
24856079 |
T |
|
| Q |
184 |
gtgttgaaat |
193 |
Q |
| |
|
|||||||||| |
|
|
| T |
24856080 |
gtgttgaaat |
24856089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 153 - 205
Target Start/End: Original strand, 6825057 - 6825110
Alignment:
| Q |
153 |
ttggagtttttgaaatatgcatcaaggaggagtgttgaaat-tgatacatattt |
205 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |||| |||| ||||||| |
|
|
| T |
6825057 |
ttggagttactgaaatatgcatcaaggaggagtgttaaaatgtgatgcatattt |
6825110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 81
Target Start/End: Original strand, 24854187 - 24854259
Alignment:
| Q |
9 |
agaccaataacaaatattatggcaagaggtgacacaaatttactattatagtggatgtaacacctgtcaaatt |
81 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||| |||| ||| || ||| | ||||||||| ||||||| |
|
|
| T |
24854187 |
agaccaataacaaatattacggcaagaggtggtacatattttttatcattgtgaaggtaacacctctcaaatt |
24854259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 237
Target Start/End: Original strand, 28786832 - 28786884
Alignment:
| Q |
185 |
tgttgaaattgatacatatttttagaacattttagttaaaataatgacaattt |
237 |
Q |
| |
|
|||||||||||||| |||||| || || ||| |||||||| |||||||||||| |
|
|
| T |
28786832 |
tgttgaaattgatatatatttctaaaatattctagttaaattaatgacaattt |
28786884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0406 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: scaffold0406
Description:
Target: scaffold0406; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 5 - 193
Target Start/End: Original strand, 5932 - 6123
Alignment:
| Q |
5 |
aagaagaccaataacaaatattatggcaagaggtgacacaaatttactattatagtggatgtaacacctgtcaaattgatcaactatgaagagtatcaat |
104 |
Q |
| |
|
||||||||||||||||||||||||||||| || || ||||||||| |||| || ||||| |||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
5932 |
aagaagaccaataacaaatattatggcaatagatgtcacaaattttctatcatggtggaggtaacacctgtcaaattgatcaactacgaagagtttcaat |
6031 |
T |
|
| Q |
105 |
gcagga---gatgatatcacaaatctatgttcgagcaactaggtactacaattggagtttttgaaatatgcatcaaggaggagtgttgaaat |
193 |
Q |
| |
|
|||||| ||||||| |||||||||||||| ||||||||| |||||||| ||| |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
6032 |
gcaggaggggatgatagcacaaatctatgtttgagcaactaagtactacatttgaagttttcgaaatatgcatcaaggaggagtgttgaaat |
6123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 109; Significance: 7e-55; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 25 - 228
Target Start/End: Complemental strand, 1275635 - 1275429
Alignment:
| Q |
25 |
ttatggcaagaggtgacacaaatttactattatagtggatgtaacacctgtcaaattgatcaactatgaagagtatcaatgcagga---gatgatatcac |
121 |
Q |
| |
|
|||| ||||||||| |||||||| |||||| || ||||| |||| || ||||||||| ||||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
1275635 |
ttatagcaagaggtaacacaaatgtactatcatggtggaggtaagacttgtcaaattaatcaactatgaagagtatcaatgtaggaaaagatgatatcac |
1275536 |
T |
|
| Q |
122 |
aaatctatgttcgagcaactaggtactacaattggagtttttgaaatatgcatcaaggaggagtgttgaaattgatacatatttttagaacattttagtt |
221 |
Q |
| |
|
||||||||||| ||||||||| | | |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||| |
|
|
| T |
1275535 |
aaatctatgtttgagcaactacgcattacatttggagtttctgaaatatgcatcaaggaggagtgttgaaattgatacatatttctagaattttctagtt |
1275436 |
T |
|
| Q |
222 |
aaaataa |
228 |
Q |
| |
|
|| |||| |
|
|
| T |
1275435 |
aatataa |
1275429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 96; Significance: 4e-47; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 31 - 193
Target Start/End: Original strand, 5047668 - 5047833
Alignment:
| Q |
31 |
caagaggtgacacaaatttactattatagtggatgtaacacctgtcaaattgatcaactatgaagagtatcaatgcagga---gatgatatcacaaatct |
127 |
Q |
| |
|
||||||||| || | |||| |||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
5047668 |
caagaggtgccaaatattttctatcatggtggaggtaacacctgtcaaattgatcaactatgaagagtatcaatgcaggaggagatgatagcacaaatct |
5047767 |
T |
|
| Q |
128 |
atgttcgagcaactaggtactacaattggagtttttgaaatatgcatcaaggaggagtgttgaaat |
193 |
Q |
| |
|
||||| || |||||| |||||||| ||| |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
5047768 |
atgtttgaacaactacgtactacatttgaagttttcgaaatatgcatcaaggaggagtgttgaaat |
5047833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 29 - 193
Target Start/End: Original strand, 5046895 - 5047062
Alignment:
| Q |
29 |
ggcaagaggtgacacaaatttactattatagtggatgtaacacctgtcaaattgatcaactatgaagagtatcaatgcaggag---atgatatcacaaat |
125 |
Q |
| |
|
|||| |||||| || | |||| |||| || ||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||| |
|
|
| T |
5046895 |
ggcatgaggtgccaaatattttctatcatggtggaggtaacacctgtcaaattgatcaactatgaagagtatcaatgcagaaggatatgatagcacaaat |
5046994 |
T |
|
| Q |
126 |
ctatgttcgagcaactaggtactacaattggagtttttgaaatatgcatcaaggaggagtgttgaaat |
193 |
Q |
| |
|
||||||| || |||||| |||||||| ||| |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
5046995 |
ctatgtttgaacaactacgtactacatttgaagttttcgaaatatgcatcaaggaggagtgttgaaat |
5047062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 9 - 235
Target Start/End: Complemental strand, 5664204 - 5663975
Alignment:
| Q |
9 |
agaccaataacaaatattatggcaagaggtgacacaaatttactattatagtggatgtaacacctgtcaaattgatcaactatgaagagtatcaatgcag |
108 |
Q |
| |
|
||||| ||||||||||||||| ||||| |||||||||||||||||| | ||||| ||||||| |||||||||||||||| || || || ||||||| |
|
|
| T |
5664204 |
agaccgataacaaatattatgacaagaagtgacacaaatttactatcacggtggaggtaacacttgtcaaattgatcaaccataaaaag---caatgcat |
5664108 |
T |
|
| Q |
109 |
ga---gatgatatcacaaatctatgttcgagcaactaggtactacaat----tggagtttttgaaatatgcatcaaggaggagtgttgaaattgatacat |
201 |
Q |
| |
|
|| |||||||||| ||||||||| | ||||||||| ||||||| | ||||||||||||||| ||||||||||| |||| ||||||||||||||| |
|
|
| T |
5664107 |
gacaagatgatatcaaaaatctatgattgagcaactacatactacattaatttggagtttttgaaatgtgcatcaaggatgagttttgaaattgatacat |
5664008 |
T |
|
| Q |
202 |
atttttagaacattttagttaaaataatgacaat |
235 |
Q |
| |
|
|||||||||| ||| ||||||||| ||||||||| |
|
|
| T |
5664007 |
atttttagaatattctagttaaaa-aatgacaat |
5663975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 18 - 203
Target Start/End: Complemental strand, 22055904 - 22055724
Alignment:
| Q |
18 |
acaaatattatggcaagaggtgacacaaatttactattatagtggatgtaacacctgtcaaattgatcaactatgaagagtatcaatgc---aggagatg |
114 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||||||| || || || ||||||| ||| |||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
22055904 |
acaagtattatggcaagatgtgacacaaatttactatcatggtagaggtaacacttgtaaaattgatcaactatgaaaagtatcaatgcatgaggagatg |
22055805 |
T |
|
| Q |
115 |
atatcacaaatctatgttcgagcaactaggtactacaattggagtttttgaaatatgcatcaaggaggagtgttgaaattgatacatat |
203 |
Q |
| |
|
||||| ||||| |||| |||| |||||| | |||||||||| |||| || ||| |||||||||||||||||||||||||||| |
|
|
| T |
22055804 |
atatc--------atgtttgagctactatgtactagatttggagttttcgaaacatacattaaggaggagtgttgaaattgatacatat |
22055724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 153 - 235
Target Start/End: Original strand, 29372959 - 29373039
Alignment:
| Q |
153 |
ttggagtttttgaaatatgcatcaaggaggagtgttgaaattgatacatatttttagaacattttagttaaaataatgacaat |
235 |
Q |
| |
|
|||||||||| || |||||||| ||||||||| |||||| |||||||| ||| ||||| | ||||||||||| |||||||| |
|
|
| T |
29372959 |
ttggagttttcgacatatgcattaaggaggagagttgaa--tgatacatgtttctagaataatttagttaaaaatatgacaat |
29373039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 8e-30; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 41 - 193
Target Start/End: Original strand, 12739032 - 12739185
Alignment:
| Q |
41 |
cacaaatttactattatagtggatgtaacacctgtcaaattgatcaactatgaagagtatcaatgcaggaga---tgatatcacaaatctatgttcgagc |
137 |
Q |
| |
|
||||||||| |||| | |||||||||||| |||||||||||||| |||| ||||||||||||||||||| ||||||||||||| ||||| ||| |
|
|
| T |
12739032 |
cacaaattttctatcacggtggatgtaaca--tgtcaaattgatcatctataaagagtatcaatgcaggaggagctgatatcacaaatatatgtatgaga |
12739129 |
T |
|
| Q |
138 |
aactaggtactacaattggagtttttgaaatatgcatcaaggaggagtgttgaaat |
193 |
Q |
| |
|
||||| |||||||| ||| ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
12739130 |
aactacgtactacatttgatgttttcgaaatatgcatcaaggaggagtgttgaaat |
12739185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 155 - 226
Target Start/End: Original strand, 48309235 - 48309306
Alignment:
| Q |
155 |
ggagtttttgaaatatgcatcaaggaggagtgttgaaattgatacatatttttagaacattttagttaaaat |
226 |
Q |
| |
|
||||||| |||||||| || |||||| ||||||||||||||| |||||||||| || ||| |||| ||||| |
|
|
| T |
48309235 |
ggagtttccgaaatatgaattaaggagaagtgttgaaattgatgcatatttttaaaatattctagtaaaaat |
48309306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 231
Target Start/End: Complemental strand, 22622652 - 22622606
Alignment:
| Q |
185 |
tgttgaaattgatacatatttttagaacattttagttaaaataatga |
231 |
Q |
| |
|
||||||||||||||||||||| ||||| ||| ||||||||||||||| |
|
|
| T |
22622652 |
tgttgaaattgatacatatttctagaatattctagttaaaataatga |
22622606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0373 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0373
Description:
Target: scaffold0373; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 153 - 205
Target Start/End: Complemental strand, 15216 - 15163
Alignment:
| Q |
153 |
ttggagtttttgaaatatgcatcaaggaggagtgttgaaat-tgatacatattt |
205 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |||| |||| ||||||| |
|
|
| T |
15216 |
ttggagttactgaaatatgcatcaaggaggagtgttaaaatgtgatgcatattt |
15163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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