View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11516_low_32 (Length: 255)
Name: NF11516_low_32
Description: NF11516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11516_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 250
Target Start/End: Complemental strand, 30872594 - 30872363
Alignment:
| Q |
19 |
accacaaaggcaccaacacggcgtcacgttgttgttcacgcggcggcttccgacgcaacaacctcccttcaagctagtagctatgaagaaggaaagctgg |
118 |
Q |
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| T |
30872594 |
accacaaaggcaccaacacggcgtcatgtggtggttcatgcggcagcttccgacacaacaacctcccttcaagctagtagctatgaagaaggaaagctgg |
30872495 |
T |
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| Q |
119 |
taagaccaaaatggactggagagactcctctctctcgcatggttcaagctcttatatctttcaagcctttatactctatcctcaagcttggtgctagaca |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30872494 |
taagaccaaaatggactggagagactcctctctctcgcatggttcgagctcttatatctttcaagcctttatactctatcctcaagcttggtgctagaca |
30872395 |
T |
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| Q |
219 |
agtttttataaggttggttaacctttgcttct |
250 |
Q |
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||||||||||||||||||||||| |||||||| |
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| T |
30872394 |
agtttttataaggttggttaaccattgcttct |
30872363 |
T |
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