View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11516_low_34 (Length: 253)
Name: NF11516_low_34
Description: NF11516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11516_low_34 |
 | |
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| [»] scaffold0096 (1 HSPs) |
| | |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 18 - 246
Target Start/End: Complemental strand, 31770503 - 31770275
Alignment:
| Q |
18 |
gatggttcagattgaatattttgcatcagttttaggtactcactgtctcactatttttctctaatttctatcaatttgttaaggtttagaaatctctacc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31770503 |
gatggttcagattgaatattttgcatcagttttaggtactcactctctcactatttttctctaatttctatcaatttgttaaggtttagaaatctctacc |
31770404 |
T |
|
| Q |
118 |
accactttatctttgcaaaacatttttctttttctctcaattgaatcttcaatacctcttctattaggtcagaatttatcttactagatggttctatcaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31770403 |
accactttatctttgcaaaacatttttctttttctctcaattgaatcttcaatacctcttctattaggtcagaatttatcttactagatggttctatcaa |
31770304 |
T |
|
| Q |
218 |
aatagattctacgttagagctttcctttg |
246 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
31770303 |
aatagattctacgttagagctttcctttg |
31770275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 63 - 246
Target Start/End: Complemental strand, 7607898 - 7607715
Alignment:
| Q |
63 |
tctcactatttttctctaatttctatcaatttgttaaggtttagaaatctctaccaccactttatctttgcaaaacatttttctttttctctcaattgaa |
162 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7607898 |
tctcactatttttctctaatttctatcaatttgttaaggtttagaaatctctaccaccactttatctttgcaaaacatttttctttttctctcaattgaa |
7607799 |
T |
|
| Q |
163 |
tcttcaatacctcttctattaggtcagaatttatcttactagatggttctatcaaaatagattctacgttagagctttcctttg |
246 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7607798 |
tcttcaatacctcttctattaggtcataatttatcttactagatggttctatcaaaatagattctacgttagagctttcctttg |
7607715 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 103 - 246
Target Start/End: Original strand, 14184934 - 14185077
Alignment:
| Q |
103 |
ttagaaatctctaccaccactttatctttgcaaaacatttttctttttctctcaattgaatcttcaatacctcttctattaggtcagaatttatcttact |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14184934 |
ttagaaatctctaccaccactttatctttgcaaaacatttttctttttctctcaattgaatcttcaatacctcttctattaggtcagaatttatcttact |
14185033 |
T |
|
| Q |
203 |
agatggttctatcaaaatagattctacgttagagctttcctttg |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14185034 |
agatggttctatcaaaatagattctacgttagagctttcctttg |
14185077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0096 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: scaffold0096
Description:
Target: scaffold0096; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 19 - 228
Target Start/End: Original strand, 28526 - 28734
Alignment:
| Q |
19 |
atggttcagattgaatattttgcatcagttttaggtactcactgtctcactatttttctctaatttctatcaatttgttaaggtttagaaatctctacca |
118 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28526 |
atggttcagatggaatattttgtatcagttttaggtactccctctctcactatttttctctaatttctatcaatttgttaaggtttagaaatctctacca |
28625 |
T |
|
| Q |
119 |
ccactttatctttgcaaaacatttttctttttctctcaattgaatcttcaatacctcttctattaggtcagaatttatcttactagatggttctatcaaa |
218 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |
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| T |
28626 |
ccactttatctttgcaaaaca-ttttctttttctctcaattgaatcttcaatacctcttctattaggtcagaatctatcttacttgatggttctatcaaa |
28724 |
T |
|
| Q |
219 |
atagattcta |
228 |
Q |
| |
|
|| ||||||| |
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|
| T |
28725 |
atggattcta |
28734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 19 - 228
Target Start/End: Complemental strand, 12538056 - 12537848
Alignment:
| Q |
19 |
atggttcagattgaatattttgcatcagttttaggtactcactgtctcactatttttctctaatttctatcaatttgttaaggtttagaaatctctacca |
118 |
Q |
| |
|
|||||| |||| |||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
12538056 |
atggtttagatggaatattttgtatcagttttaggtactccatctctcactatttttctctaatttctatcaatttgttaaggtttagaaatctccacca |
12537957 |
T |
|
| Q |
119 |
ccactttatctttgcaaaacatttttctttttctctcaattgaatcttcaatacctcttctattaggtcagaatttatcttactagatggttctatcaaa |
218 |
Q |
| |
|
| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
12537956 |
caactttatctttgcaaaacattttt-tttttctctcaattgaatcttcaatacctcttctattaggtcagaatttatcttacttgatggttctatcaaa |
12537858 |
T |
|
| Q |
219 |
atagattcta |
228 |
Q |
| |
|
|| ||||||| |
|
|
| T |
12537857 |
atggattcta |
12537848 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 18 - 146
Target Start/End: Original strand, 41810811 - 41810939
Alignment:
| Q |
18 |
gatggttcagattgaatattttgcatcagttttaggtactcactgtctcactatttttctctaatttctatcaatttgttaaggtttagaaatctctacc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
41810811 |
gatggttcagattgaatattttgcatcagttttaggtactcactctctcactatttttctctaatttctatcaatttgttaaggtttagaaatctctaac |
41810910 |
T |
|
| Q |
118 |
accactttatctttgcaaaacatttttct |
146 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
41810911 |
accactttatctttgcaaaacatttttct |
41810939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 42 - 244
Target Start/End: Original strand, 12870660 - 12870861
Alignment:
| Q |
42 |
atcagttttaggtactcactgtctcactatttttctctaatttctatcaatttgttaaggtttagaaatctctaccaccactttatctttgcaaaacatt |
141 |
Q |
| |
|
|||| |||||||||| | | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||| ||| |
|
|
| T |
12870660 |
atcaattttaggtaccccttctctcactatttttctctaatttctatcaatttgttagggtttagaaatctctaccactactttatatttgcaaatcatc |
12870759 |
T |
|
| Q |
142 |
tttctttttctctcaattgaatcttcaatacctcttctattaggtcagaatttatcttactagatggttctatcaaaatagattctacgttagagctttc |
241 |
Q |
| |
|
|||| |||||||||||||||||||||||| | | ||| |||||||| ||||||||||||| | |||||||| ||| | ||||||| || |||||||| |
|
|
| T |
12870760 |
tttc-ttttctctcaattgaatcttcaattctttatctgttaggtcataatttatcttactcggtggttctaacaactttgattctatattcgagctttc |
12870858 |
T |
|
| Q |
242 |
ctt |
244 |
Q |
| |
|
||| |
|
|
| T |
12870859 |
ctt |
12870861 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 63 - 217
Target Start/End: Original strand, 27765845 - 27765998
Alignment:
| Q |
63 |
tctcactatttttctctaatttctatcaatttgttaaggtttagaaatctctaccaccactttatctttgcaaaacatttttctttttctctcaattgaa |
162 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| ||||||||||| || ||||||| |||||||| ||| |||| |||||||||||||||| |
|
|
| T |
27765845 |
tctcactatttttctctaatttctatcaatttgttagggtttggaaatctctactactactttatatttgcaaatcatctttc-ttttctctcaattgaa |
27765943 |
T |
|
| Q |
163 |
tcttcaatacctcttctattaggtcagaatttatcttactagatggttctatcaa |
217 |
Q |
| |
|
|||||||| | || ||| |||||||| ||||||||||||| | |||||||||||| |
|
|
| T |
27765944 |
tcttcaattcttcatctgttaggtcataatttatcttactcggtggttctatcaa |
27765998 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 153 - 228
Target Start/End: Original strand, 32279926 - 32280001
Alignment:
| Q |
153 |
ctcaattgaatcttcaatacctcttctattaggtcagaatttatcttactagatggttctatcaaaatagattcta |
228 |
Q |
| |
|
||||||||||| || ||| ||||||||||||||||| ||||| ||||||| |||||||||||||| | ||||||| |
|
|
| T |
32279926 |
ctcaattgaattttaaattcctcttctattaggtcataatttttcttactcaatggttctatcaaattggattcta |
32280001 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 71 - 143
Target Start/End: Complemental strand, 6666784 - 6666712
Alignment:
| Q |
71 |
tttttctctaatttctatcaatttgttaaggtttagaaatctctaccaccactttatctttgcaaaacatttt |
143 |
Q |
| |
|
|||| |||| |||||||||||||| ||| |||||| |||||||||| |||| ||||||||||| || |||||| |
|
|
| T |
6666784 |
ttttcctctcatttctatcaatttattagggtttacaaatctctactaccaatttatctttgccaaccatttt |
6666712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 228
Target Start/End: Complemental strand, 36022 - 35947
Alignment:
| Q |
153 |
ctcaattgaatcttcaatacctcttctattaggtcagaatttatcttactagatggttctatcaaaatagattcta |
228 |
Q |
| |
|
||||||||||| || ||| ||||||||||||||||| ||||| ||||||| ||| |||||||||| | ||||||| |
|
|
| T |
36022 |
ctcaattgaattttgaattcctcttctattaggtcataatttttcttactcaatgtttctatcaaattggattcta |
35947 |
T |
|
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