View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11516_low_35 (Length: 243)

Name: NF11516_low_35
Description: NF11516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11516_low_35
NF11516_low_35
[»] chr8 (6 HSPs)
chr8 (2-237)||(25218544-25218779)
chr8 (8-237)||(7821849-7822078)
chr8 (16-237)||(30307196-30307417)
chr8 (1-237)||(21113723-21113959)
chr8 (2-194)||(31978549-31978741)
chr8 (8-237)||(25209026-25209240)
[»] chr5 (13 HSPs)
chr5 (1-237)||(25542772-25543008)
chr5 (8-237)||(37372947-37373176)
chr5 (8-237)||(8428553-8428782)
chr5 (1-237)||(14192791-14193027)
chr5 (2-237)||(39883188-39883423)
chr5 (2-237)||(27881089-27881324)
chr5 (1-237)||(17871616-17871852)
chr5 (1-237)||(3689981-3690217)
chr5 (1-237)||(3876570-3876806)
chr5 (1-123)||(24629954-24630076)
chr5 (1-123)||(10025067-10025189)
chr5 (1-123)||(30346637-30346759)
chr5 (1-164)||(37261319-37261482)
[»] chr7 (8 HSPs)
chr7 (2-237)||(21070041-21070276)
chr7 (8-237)||(7036731-7036960)
chr7 (8-237)||(12781127-12781356)
chr7 (2-237)||(9001124-9001359)
chr7 (8-237)||(12785957-12786186)
chr7 (1-237)||(22843808-22844044)
chr7 (2-237)||(5828534-5828769)
chr7 (1-123)||(42232088-42232210)
[»] chr2 (11 HSPs)
chr2 (2-237)||(21395375-21395610)
chr2 (1-237)||(27192493-27192729)
chr2 (1-237)||(27842307-27842543)
chr2 (1-237)||(24245829-24246065)
chr2 (1-237)||(24269049-24269285)
chr2 (1-237)||(27509378-27509614)
chr2 (8-237)||(28666151-28666380)
chr2 (1-195)||(17683850-17684044)
chr2 (8-237)||(37824985-37825214)
chr2 (8-237)||(41920152-41920381)
chr2 (1-177)||(35609689-35609865)
[»] chr4 (8 HSPs)
chr4 (8-237)||(35855918-35856147)
chr4 (2-237)||(49710178-49710412)
chr4 (8-237)||(38518107-38518336)
chr4 (2-237)||(1860682-1860917)
chr4 (8-237)||(49786807-49787036)
chr4 (1-123)||(55559131-55559253)
chr4 (82-237)||(13337320-13337475)
chr4 (170-237)||(618203-618270)
[»] chr1 (11 HSPs)
chr1 (8-237)||(6310973-6311202)
chr1 (8-237)||(37390131-37390360)
chr1 (1-237)||(36207219-36207455)
chr1 (2-237)||(16042030-16042265)
chr1 (1-237)||(2453096-2453332)
chr1 (1-237)||(18148692-18148928)
chr1 (1-234)||(2329173-2329403)
chr1 (1-174)||(48238519-48238692)
chr1 (1-237)||(48775314-48775550)
chr1 (1-123)||(52500673-52500795)
chr1 (117-235)||(48233498-48233616)
[»] chr3 (13 HSPs)
chr3 (8-237)||(32782-33011)
chr3 (2-237)||(10110605-10110840)
chr3 (1-223)||(50410176-50410398)
chr3 (1-237)||(13530043-13530279)
chr3 (2-237)||(10000412-10000647)
chr3 (1-195)||(52918070-52918264)
chr3 (2-192)||(10237561-10237750)
chr3 (1-195)||(10968802-10968996)
chr3 (9-237)||(11368659-11368888)
chr3 (1-193)||(11362262-11362455)
chr3 (1-171)||(46913075-46913245)
chr3 (1-143)||(47692973-47693115)
chr3 (1-164)||(10038644-10038807)
[»] scaffold0017 (1 HSPs)
scaffold0017 (1-237)||(186558-186794)
[»] chr6 (8 HSPs)
chr6 (1-238)||(18344129-18344366)
chr6 (19-237)||(29640007-29640225)
chr6 (1-237)||(2202158-2202394)
chr6 (1-237)||(30881331-30881567)
chr6 (1-195)||(10187548-10187742)
chr6 (19-237)||(31510178-31510396)
chr6 (2-238)||(15333648-15333884)
chr6 (3-131)||(12517394-12517522)
[»] scaffold1139 (1 HSPs)
scaffold1139 (1-237)||(1004-1240)
[»] scaffold0002 (1 HSPs)
scaffold0002 (2-237)||(321315-321550)
[»] scaffold0090 (1 HSPs)
scaffold0090 (8-237)||(48915-49144)
[»] scaffold0073 (2 HSPs)
scaffold0073 (2-237)||(31938-32172)
scaffold0073 (2-195)||(19462-19655)
[»] scaffold0134 (1 HSPs)
scaffold0134 (1-237)||(5239-5474)
[»] scaffold0262 (1 HSPs)
scaffold0262 (1-236)||(19010-19245)
[»] scaffold0550 (1 HSPs)
scaffold0550 (2-236)||(552-786)
[»] scaffold0356 (1 HSPs)
scaffold0356 (3-237)||(17855-18082)
[»] scaffold0003 (2 HSPs)
scaffold0003 (1-237)||(182815-183051)
scaffold0003 (1-193)||(165534-165727)
[»] scaffold0025 (1 HSPs)
scaffold0025 (4-195)||(16691-16882)
[»] scaffold0118 (1 HSPs)
scaffold0118 (1-123)||(28727-28849)
[»] scaffold0888 (1 HSPs)
scaffold0888 (1-94)||(24-117)
[»] scaffold1424 (1 HSPs)
scaffold1424 (4-52)||(1655-1703)


Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 2 - 237
Target Start/End: Complemental strand, 25218779 - 25218544
Alignment:
Q  2 acaaacagaatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgagt 101  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  25218779 acaaacagaatcagagcttaaatactctttctcttcacctggaatcagcgacatcataaattcgttaacatgctcaactgaatcaagcgttggtgcgagt 25218680  T
Q  102 attcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggagacacaaagtctataagtgacatcaacggatttgttgtgttagata 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  ||||    
T  25218679 attcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtctgata 25218580  T
Q  202 ttagataatctttaagaatttcaaccttcatttcac 237  Q
    | ||  |||||| | ||||||| |||||||||||||    
T  25218579 tcagcaaatcttcaggaatttctaccttcatttcac 25218544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 8 - 237
Target Start/End: Original strand, 7821849 - 7822078
Alignment:
Q  8 agaatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgagtattccc 107  Q
    ||||||| ||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  7821849 agaatcagagcttaaatactctttctcttcacctgaaatcagcgacatcataaattcgttaacatgctcaactgaatcaagcgttggtgcgagtattccc 7821948  T
Q  108 ctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggagacacaaagtctataagtgacatcaacggatttgttgtgttagatattagat 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| ||||| ||      
T  7821949 ctttcttggaaaaatagttggtcaccaaggttatcattcagatcggaatacacaaagtctataagtgacatcaacggatttgttgtgtttgatatcagca 7822048  T
Q  208 aatctttaagaatttcaaccttcatttcac 237  Q
    |||||| | ||||||| |||||||||||||    
T  7822049 aatcttcaggaatttctaccttcatttcac 7822078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 16 - 237
Target Start/End: Original strand, 30307196 - 30307417
Alignment:
Q  16 agcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgagtattcccctttcttg 115  Q
    |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30307196 agcttaaatactctttctcttcacctggaatcagcgacatcataaattcgttaacatgctcaactgaatcaagcgttggtgcgagtattcccctttcttg 30307295  T
Q  116 gaaaaatagttggtcaccaaggttatcattcagatcgggagacacaaagtctataagtgacatcaacggatttgttgtgttagatattagataatcttta 215  Q
    ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||  ||||| ||  |||||| |    
T  30307296 gaaaaatagttggtcaccaaggttatcgttcagatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtccgatatcagcaaatcttca 30307395  T
Q  216 agaatttcaaccttcatttcac 237  Q
     ||||||| || ||||||||||    
T  30307396 ggaatttctacattcatttcac 30307417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 21113959 - 21113723
Alignment:
Q  1 gacaaacagaatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgag 100  Q
    |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||    
T  21113959 gacaaacagaatcagagtttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgttcaactgaatcaagcgttggtgcaag 21113860  T
Q  101 tattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggagacacaaagtctataagtgacatcaacggatttgttgtgttagat 200  Q
    ||||||||||| ||||||||||||  ||||||||||||||||||||| |||  || |||||||||||||||||||||||||| ||||||||||||  |||    
T  21113859 tattccccttttttggaaaaatagcgggtcaccaaggttatcattcaaatcaagatacacaaagtctataagtgacatcaacagatttgttgtgtccgat 21113760  T
Q  201 attagataatctttaagaatttcaaccttcatttcac 237  Q
    || ||  |||||| | ||||||| |||||||||||||    
T  21113759 ataagcaaatcttcaggaatttctaccttcatttcac 21113723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 2 - 194
Target Start/End: Complemental strand, 31978741 - 31978549
Alignment:
Q  2 acaaacagaatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgagt 101  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||| ||| ||||||||||||||||||||||||| |||||||    
T  31978741 acaaacagaatcagagcttaaatactctttctcttcacctggaatcagcgacatcataaatttgttgacatgctcaactgaatcaagcgttgatgcgagt 31978642  T
Q  102 attcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggagacacaaagtctataagtgacatcaacggatttgttgtg 194  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||    
T  31978641 attcccctttcttggaaaaatagctggtcaccaaggttatcattcagatcgggatacacaaagtttataagtgacatcaacagatttgttgtg 31978549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 8 - 237
Target Start/End: Complemental strand, 25209240 - 25209026
Alignment:
Q  8 agaatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgagtattccc 107  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  25209240 agaatcagagcttaaatactctttctcttcacctggaatcagcgacatcataaattcgttaacatgctcaactgaatcaagcgttggtgcgagtattccc 25209141  T
Q  108 ctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggagacacaaagtctataagtgacatcaacggatttgttgtgttagatattagat 207  Q
    ||||||||||||||||||||||||||||||||||||||               |||||||||||||||||||||||||||||||||||  || || ||      
T  25209140 ctttcttggaaaaatagttggtcaccaaggttatcatt---------------aaagtctataagtgacatcaacggatttgttgtgtctgacatcagca 25209056  T
Q  208 aatctttaagaatttcaaccttcatttcac 237  Q
    |||||| | ||||||| |||||||||||||    
T  25209055 aatcttcaggaatttctaccttcatttcac 25209026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 181; Significance: 6e-98; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 25543008 - 25542772
Alignment:
Q  1 gacaaacagaatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgag 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25543008 gacaaacagaatcagagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgag 25542909  T
Q  101 tattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggagacacaaagtctataagtgacatcaacggatttgttgtgttagat 200  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||  |||||||||||  |||    
T  25542908 tattcccctttcttggaaaaatagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacatatttgttgtgtccgat 25542809  T
Q  201 attagataatctttaagaatttcaaccttcatttcac 237  Q
    || ||| |||||| | ||||||| |||||||||||||    
T  25542808 atgagaaaatcttcaggaatttctaccttcatttcac 25542772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 8 - 237
Target Start/End: Original strand, 37372947 - 37373176
Alignment:
Q  8 agaatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgagtattccc 107  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  37372947 agaatcagagcttaaatactctttctcttcacctggaatcagtgacatcataaattggttaacatgctcaactgaatcaagcgttggtgcgagtattccc 37373046  T
Q  108 ctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggagacacaaagtctataagtgacatcaacggatttgttgtgttagatattagat 207  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||  ||||| ||      
T  37373047 ctttcttcgaaaaatagttggtcaccaaggttatcattcagatcgggatacacaaagtctataagtgacatcaacggatttgttatgtctgatatcagca 37373146  T
Q  208 aatctttaagaatttcaaccttcatttcac 237  Q
    |||||| | ||||||| |||||||||||||    
T  37373147 aatcttcaggaatttctaccttcatttcac 37373176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 8 - 237
Target Start/End: Complemental strand, 8428782 - 8428553
Alignment:
Q  8 agaatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgagtattccc 107  Q
    ||||||| || ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||| |||||||||||||||    
T  8428782 agaatcagaggttaaatactctttctcttcacctggaatcagcgacatcataaattcgttaacatgctcaattgaatcaagcgtgggtgcgagtattccc 8428683  T
Q  108 ctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggagacacaaagtctataagtgacatcaacggatttgttgtgttagatattagat 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  ||||| ||      
T  8428682 ctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtctgatatcagca 8428583  T
Q  208 aatctttaagaatttcaaccttcatttcac 237  Q
    |||||| | ||||||| |||||||||||||    
T  8428582 aatcttcaggaatttctaccttcatttcac 8428553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 14193027 - 14192791
Alignment:
Q  1 gacaaacagaatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgag 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  14193027 gacaaacagaatcagagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaattaagcgttggtgcgag 14192928  T
Q  101 tattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggagacacaaagtctataagtgacatcaacggatttgttgtgttagat 200  Q
    ||||||||||||||||||||||||  | ||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||  |||    
T  14192927 tattcccctttcttggaaaaatagcggatcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacagatttgttgtgtccgat 14192828  T
Q  201 attagataatctttaagaatttcaaccttcatttcac 237  Q
    || ||  |||||| |  |||||| |||||||||||||    
T  14192827 atgagcaaatcttcagaaatttctaccttcatttcac 14192791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 2 - 237
Target Start/End: Original strand, 39883188 - 39883423
Alignment:
Q  2 acaaacagaatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgagt 101  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  39883188 acaaacagaatcagagcttaaatactctttctcttcacttggaatcaacgacatcataaattcgttaacatgctcaactgaatcaagcgttggtgcgagt 39883287  T
Q  102 attcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggagacacaaagtctataagtgacatcaacggatttgttgtgttagata 201  Q
    ||||||||||||||| ||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  ||||    
T  39883288 attcccctttcttggcaaaatagctgggcaccaaggttatcattcagatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtccgata 39883387  T
Q  202 ttagataatctttaagaatttcaaccttcatttcac 237  Q
    | ||  |||||||| |||| || |||||||||||||    
T  39883388 tcagcaaatctttaggaatatctaccttcatttcac 39883423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 2 - 237
Target Start/End: Original strand, 27881089 - 27881324
Alignment:
Q  2 acaaacagaatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgagt 101  Q
    ||||| ||||||| |||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  27881089 acaaatagaatcagagcttaaatactctttctcttcacttggaatcagcgacatcataaattcgttaacatgctcagctgaatcaagcgttggtgcgagt 27881188  T
Q  102 attcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggagacacaaagtctataagtgacatcaacggatttgttgtgttagata 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||  ||||    
T  27881189 attcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggatacacaaagtctataagtgacatcaacggatttgttgggtccgata 27881288  T
Q  202 ttagataatctttaagaatttcaaccttcatttcac 237  Q
    | ||  |||||| | || |||| ||||| |||||||    
T  27881289 tcagcaaatcttcaggagtttctacctttatttcac 27881324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 17871852 - 17871616
Alignment:
Q  1 gacaaacagaatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgag 100  Q
    ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  17871852 gacaaacagaaccagagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaacagaatcaagcgttggtgcgag 17871753  T
Q  101 tattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggagacacaaagtctataagtgacatcaacggatttgttgtgttagat 200  Q
    |||| |||||||||||||||||||  ||||||||||||||||||| | |||| || |||||| ||||||||||||||||||||||||||||||||  |||    
T  17871752 tatttccctttcttggaaaaatagcgggtcaccaaggttatcatttaaatcgagatacacaatgtctataagtgacatcaacggatttgttgtgtccgat 17871653  T
Q  201 attagataatctttaagaatttcaaccttcatttcac 237  Q
    || ||  |||||| | ||||||| |||||||||||||    
T  17871652 atgagcaaatcttcaggaatttctaccttcatttcac 17871616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 3689981 - 3690217
Alignment:
Q  1 gacaaacagaatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgag 100  Q
    ||||||| |||||| |||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  3689981 gacaaactgaatcagagcttaaatactctttctctccacttggaatcactgacatcatatattcgttaacatgctcaaccgaatcaagcgttggtgcgag 3690080  T
Q  101 tattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggagacacaaagtctataagtgacatcaacggatttgttgtgttagat 200  Q
    ||||| | ||||||| ||||| ||| ||||||||| ||||||||||| ||||||| | |||||||| || ||||||||||||| ||||||||| |  |||    
T  3690081 tattcacttttcttgaaaaaagagtgggtcaccaatgttatcattcaaatcgggatatacaaagtccattagtgacatcaacgaatttgttgtatcggat 3690180  T
Q  201 attagataatctttaagaatttcaaccttcatttcac 237  Q
    || ||  |||||||  ||||||| |||||||||||||    
T  3690181 atgagcaaatctttgggaatttctaccttcatttcac 3690217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 3876806 - 3876570
Alignment:
Q  1 gacaaacagaatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgag 100  Q
    ||||||| |||||| |||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  3876806 gacaaactgaatcagagcttaaatactctttctctccacttggaatcactgacatcatatattcgttaacatgctcaaccgaatcaagcgttggtgcgag 3876707  T
Q  101 tattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggagacacaaagtctataagtgacatcaacggatttgttgtgttagat 200  Q
    ||||| | ||||||| ||||| ||| |||| |||| ||||||||||| ||||||| | |||||||| || ||||||||||||| ||||||||| |  |||    
T  3876706 tattcacttttcttgaaaaaagagtgggtccccaatgttatcattcaaatcgggatatacaaagtccattagtgacatcaacgaatttgttgtatcggat 3876607  T
Q  201 attagataatctttaagaatttcaaccttcatttcac 237  Q
    || ||  |||||||  ||||||| |||||||||||||    
T  3876606 atgagcaaatctttgggaatttctaccttcatttcac 3876570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 24630076 - 24629954
Alignment:
Q  1 gacaaacagaatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgag 100  Q
    |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  24630076 gacaaacagaatcagagtttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgttcaactgaatcaagcgttggtgcgag 24629977  T
Q  101 tattcccctttcttggaaaaata 123  Q
    |||||||||||||||||||||||    
T  24629976 tattcccctttcttggaaaaata 24629954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 10025067 - 10025189
Alignment:
Q  1 gacaaacagaatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgag 100  Q
    |||||||||||||| || ||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  10025067 gacaaacagaatcagagtttaaatactctttctcttcacttggaatcaatgacatcatatattcgttaacatgttcaactgaatcaagcgttggtgcgag 10025166  T
Q  101 tattcccctttcttggaaaaata 123  Q
    |||||||||||||||||||||||    
T  10025167 tattcccctttcttggaaaaata 10025189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 30346759 - 30346637
Alignment:
Q  1 gacaaacagaatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgag 100  Q
    |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||    
T  30346759 gacaaacagaatcagagtttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgttcaacttaatcaagtgttggtgcgag 30346660  T
Q  101 tattcccctttcttggaaaaata 123  Q
    |||||||||||||||||||||||    
T  30346659 tattcccctttcttggaaaaata 30346637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 37261319 - 37261482
Alignment:
Q  1 gacaaacagaatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgag 100  Q
    |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||| || ||    
T  37261319 gacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgctcaactgaatcaagtgttggcgcaag 37261418  T
Q  101 tattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggagacacaaag 164  Q
    ||||||||||||||| |||||||   |||||  |||||||||||||| || |||| ||||||||    
T  37261419 tattcccctttcttgaaaaaataacgggtcattaaggttatcattcaaattgggatacacaaag 37261482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 180; Significance: 3e-97; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 2 - 237
Target Start/End: Complemental strand, 21070276 - 21070041
Alignment:
Q  2 acaaacagaatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgagt 101  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21070276 acaaacagaatcagagcttaaatactctttctcttcaccaggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgagt 21070177  T
Q  102 attcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggagacacaaagtctataagtgacatcaacggatttgttgtgttagata 201  Q
    |||||||||||||||||||||||  ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  ||||    
T  21070176 attcccctttcttggaaaaatagcaggttaccaaggttatcattcagatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtctgata 21070077  T
Q  202 ttagataatctttaagaatttcaaccttcatttcac 237  Q
    | ||  |||||| | ||||||| |||||||||||||    
T  21070076 tgagcaaatcttcaggaatttctaccttcatttcac 21070041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 8 - 237
Target Start/End: Original strand, 7036731 - 7036960
Alignment:
Q  8 agaatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgagtattccc 107  Q
    ||||||| || ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  7036731 agaatcagaggttaaatactctttctcttcacctggaatcagcgacatcataaattcgttaacatgctcaactgaatcaagcgttggtgcgagtattccc 7036830  T
Q  108 ctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggagacacaaagtctataagtgacatcaacggatttgttgtgttagatattagat 207  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  ||||| ||      
T  7036831 ctttcttggaaaagtagttggtcaccaaggttatcattcagatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtctgatatcagcg 7036930  T
Q  208 aatctttaagaatttcaaccttcatttcac 237  Q
    |||||| | ||||||| |||||||||||||    
T  7036931 aatcttcaggaatttctaccttcatttcac 7036960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 8 - 237
Target Start/End: Complemental strand, 12781356 - 12781127
Alignment:
Q  8 agaatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgagtattccc 107  Q
    ||||||| || ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  12781356 agaatcagaggttaaatactctttctcttcacctggaatcagcgacatcataaattcgttaacatgctcaactgaatcaagcgttggtgcgagtattccc 12781257  T
Q  108 ctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggagacacaaagtctataagtgacatcaacggatttgttgtgttagatattagat 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||   |||| ||      
T  12781256 ctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtcttatatcagca 12781157  T
Q  208 aatctttaagaatttcaaccttcatttcac 237  Q
    |||||| | ||||||| |||||||||||||    
T  12781156 aatcttcaggaatttctaccttcatttcac 12781127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 2 - 237
Target Start/End: Complemental strand, 9001359 - 9001124
Alignment:
Q  2 acaaacagaatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgagt 101  Q
    ||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  9001359 acaaacagaatcagagcttaaatactctttctcttcacctagaatcagcgacatcataaattcgttaacatgctcaactgaatcaagcgttagtgcgagt 9001260  T
Q  102 attcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggagacacaaagtctataagtgacatcaacggatttgttgtgttagata 201  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||| ||||||||||||||||||||||  ||||    
T  9001259 attcccctttcttggaaaaatagttggtcaccaaggttatcaatcagatcgggataaacaaagtctataagagacatcaacggatttgttgtgtccgata 9001160  T
Q  202 ttagataatctttaagaatttcaaccttcatttcac 237  Q
    | |   |||||| ||||||||| |||||||||||||    
T  9001159 tcaacaaatcttcaagaatttctaccttcatttcac 9001124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 8 - 237
Target Start/End: Complemental strand, 12786186 - 12785957
Alignment:
Q  8 agaatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgagtattccc 107  Q
    ||||||| || ||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||| |||||||||||| |||||||||||||||    
T  12786186 agaatcagaggttaaatactctttctcttcacctagaatcagcgacatcataaattcgttaacatgctcaattgaatcaagcgtgggtgcgagtattccc 12786087  T
Q  108 ctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggagacacaaagtctataagtgacatcaacggatttgttgtgttagatattagat 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||| ||      
T  12786086 ctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggatacacagagtctataagtgacatcaacggatttgttgtgtttgatatcagca 12785987  T
Q  208 aatctttaagaatttcaaccttcatttcac 237  Q
    |||||| | ||||||| |||||||||||||    
T  12785986 aatcttcaggaatttctaccttcatttcac 12785957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 22843808 - 22844044
Alignment:
Q  1 gacaaacagaatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgag 100  Q
    ||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  22843808 gacaaacagaaacagaacttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaacagaatcaagcgttggtgcgag 22843907  T
Q  101 tattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggagacacaaagtctataagtgacatcaacggatttgttgtgttagat 200  Q
    ||||||||||||||||||||||||  ||||||||||||||||||| | |||| || |||||| ||||||||||||||||||| |||||||||||| ||||    
T  22843908 tattcccctttcttggaaaaatagcaggtcaccaaggttatcatttaaatcgagatacacaatgtctataagtgacatcaacagatttgttgtgtcagat 22844007  T
Q  201 attagataatctttaagaatttcaaccttcatttcac 237  Q
    || ||  |||||| ||||||||| |||||||||||||    
T  22844008 atgagcaaatcttcaagaatttctaccttcatttcac 22844044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 2 - 237
Target Start/End: Complemental strand, 5828769 - 5828534
Alignment:
Q  2 acaaacagaatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgagt 101  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  5828769 acaaacagaatcagagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgagtcaagtgttggtgcgagt 5828670  T
Q  102 attcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggagacacaaagtctataagtgacatcaacggatttgttgtgttagata 201  Q
    |||||||||||||||||||||||  ||||||||||||||||||||| |||| || |||||||||||||||||||||||||  ||||||||||||  ||||    
T  5828669 attcccctttcttggaaaaatagcgggtcaccaaggttatcattcaaatcgagatacacaaagtctataagtgacatcaaaagatttgttgtgtccgata 5828570  T
Q  202 ttagataatctttaagaatttcaaccttcatttcac 237  Q
    | ||  |||||| | ||||||| |||||||||||||    
T  5828569 tgagcaaatcttcaggaatttctaccttcatttcac 5828534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 42232088 - 42232210
Alignment:
Q  1 gacaaacagaatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgag 100  Q
    |||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||    
T  42232088 gacaaacaaaatcagagtttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgttcaactgaatcaagcgttggtgagag 42232187  T
Q  101 tattcccctttcttggaaaaata 123  Q
    |||||||||||||||||||||||    
T  42232188 tattcccctttcttggaaaaata 42232210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 180; Significance: 3e-97; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 2 - 237
Target Start/End: Original strand, 21395375 - 21395610
Alignment:
Q  2 acaaacagaatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgagt 101  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  21395375 acaaacagaatcagagcttaaatactctttctcttcacctggaatcagcgacatcataaattcgttaacatgctcaactgaatcaagcgttggtgcgagt 21395474  T
Q  102 attcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggagacacaaagtctataagtgacatcaacggatttgttgtgttagata 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||  ||||    
T  21395475 attcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggatatacaaagtctataagcgacatcaacggatttgttgtgtccgata 21395574  T
Q  202 ttagataatctttaagaatttcaaccttcatttcac 237  Q
    | ||  |||||| | ||||||| |||||||||||||    
T  21395575 tcagcaaatcttcaggaatttctaccttcatttcac 21395610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 27192493 - 27192729
Alignment:
Q  1 gacaaacagaatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgag 100  Q
    |||||| ||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27192493 gacaaatagaatcagagcttaaatactctttctcttcacctagaatcagcgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgag 27192592  T
Q  101 tattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggagacacaaagtctataagtgacatcaacggatttgttgtgttagat 200  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||  |||    
T  27192593 tattcccctttcttggaaaaatagagggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacagatttgttgtgtccgat 27192692  T
Q  201 attagataatctttaagaatttcaaccttcatttcac 237  Q
    || ||  |||||||| ||||||| |||||||||||||    
T  27192693 atgagcaaatctttaggaatttctaccttcatttcac 27192729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 27842307 - 27842543
Alignment:
Q  1 gacaaacagaatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgag 100  Q
    |||||| ||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27842307 gacaaatagaatcagagcttaaatactctttctcttcacctagaatcagcgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgag 27842406  T
Q  101 tattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggagacacaaagtctataagtgacatcaacggatttgttgtgttagat 200  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||  |||    
T  27842407 tattcccctttcttggaaaaatagagggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacagatttgttgtgtccgat 27842506  T
Q  201 attagataatctttaagaatttcaaccttcatttcac 237  Q
    || ||  |||||||| ||||||| |||||||||||||    
T  27842507 atgagcaaatctttaggaatttctaccttcatttcac 27842543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 24245829 - 24246065
Alignment:
Q  1 gacaaacagaatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgag 100  Q
    |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24245829 gacaaacagaatcagatcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgag 24245928  T
Q  101 tattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggagacacaaagtctataagtgacatcaacggatttgttgtgttagat 200  Q
    ||||||||||||||| ||||||||  ||||||||||||||||||||| ||||||| |||||| |||||||||||||||| |||||||||||||||  | |    
T  24245929 tattcccctttcttgaaaaaatagcgggtcaccaaggttatcattcaaatcgggatacacaaggtctataagtgacatccacggatttgttgtgtccgtt 24246028  T
Q  201 attagataatctttaagaatttcaaccttcatttcac 237  Q
    || ||  |||||||| ||||||| |||||||||||||    
T  24246029 atgagcaaatctttaggaatttctaccttcatttcac 24246065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 24269285 - 24269049
Alignment:
Q  1 gacaaacagaatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgag 100  Q
    |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  24269285 gacaaacagaatcagagtttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgttcaactgaatcaagcgttggtgcgag 24269186  T
Q  101 tattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggagacacaaagtctataagtgacatcaacggatttgttgtgttagat 200  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||| |||| || |||||||||||||||||||||||||| ||||||||||||  |||    
T  24269185 tattcccctttcttggaaaaatagcgggtcaccaaggttatcattcaaatcgagatacacaaagtctataagtgacatcaacagatttgttgtgtccgat 24269086  T
Q  201 attagataatctttaagaatttcaaccttcatttcac 237  Q
    || ||  |||||| | ||||||| |||||||||||||    
T  24269085 atgagcaaatcttcaggaatttctaccttcatttcac 24269049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 27509378 - 27509614
Alignment:
Q  1 gacaaacagaatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgag 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  27509378 gacaaacagaatcagagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttgatgcgag 27509477  T
Q  101 tattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggagacacaaagtctataagtgacatcaacggatttgttgtgttagat 200  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||| |||||||||||  ||     
T  27509478 tattcccctttcttggaaaaatagcaggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgatatcaacgaatttgttgtgtccgac 27509577  T
Q  201 attagataatctttaagaatttcaaccttcatttcac 237  Q
    || ||  |||||||| ||||||| |||||||| ||||    
T  27509578 atgagcaaatctttaggaatttctaccttcatctcac 27509614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 8 - 237
Target Start/End: Complemental strand, 28666380 - 28666151
Alignment:
Q  8 agaatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgagtattccc 107  Q
    ||||||| || ||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||| |||||||||||| |||||||||||||||    
T  28666380 agaatcagaggttaaatactctttctcttcacctagaatcagcgacatcataaattcgttaacatgctcaattgaatcaagcgtgggtgcgagtattccc 28666281  T
Q  108 ctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggagacacaaagtctataagtgacatcaacggatttgttgtgttagatattagat 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||| ||      
T  28666280 ctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggatacacagagtctataagtgacatcaacggatttgttgtgtttgatatcagca 28666181  T
Q  208 aatctttaagaatttcaaccttcatttcac 237  Q
    |||||| | ||||||| |||||||||||||    
T  28666180 aatcttcaggaatttctaccttcatttcac 28666151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 17684044 - 17683850
Alignment:
Q  1 gacaaacagaatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgag 100  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  17684044 gacaaacaaaatcatagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaattgaatcaagcgttggagcgag 17683945  T
Q  101 tattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggagacacaaagtctataagtgacatcaacggatttgttgtgt 195  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||    
T  17683944 tattcccctttcttggaaaaatagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgt 17683850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 8 - 237
Target Start/End: Complemental strand, 37825214 - 37824985
Alignment:
Q  8 agaatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgagtattccc 107  Q
    ||||||| || ||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||| |||||||||||| |||||||||||||||    
T  37825214 agaatcagaggttaaatactctttctcttcacctagaatcagcgacatcataaattcgttaacatgctcaattgaatcaagcgtgggtgcgagtattccc 37825115  T
Q  108 ctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggagacacaaagtctataagtgacatcaacggatttgttgtgttagatattagat 207  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||| ||      
T  37825114 ctttcttggaaaaatagttggtcaccaaggttatcatttagatcgggatacacagagtctataagtgacatcaacggatttgttgtgtttgatatcagca 37825015  T
Q  208 aatctttaagaatttcaaccttcatttcac 237  Q
    |||||| | ||||||| |||||||||||||    
T  37825014 aatcttcaggaatttctaccttcatttcac 37824985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 8 - 237
Target Start/End: Complemental strand, 41920381 - 41920152
Alignment:
Q  8 agaatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgagtattccc 107  Q
    ||||||| || ||||||||||||| ||||||||||||||||  ||||||||| ||||||||||||||| || |||||||||||| |||||||||||||||    
T  41920381 agaatcagaggttaaatactctttatcttcacctggaatcaacgacatcataaattcgttaacatgcttaattgaatcaagcgtgggtgcgagtattccc 41920282  T
Q  108 ctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggagacacaaagtctataagtgacatcaacggatttgttgtgttagatattagat 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  ||||| ||      
T  41920281 ctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtctgatatcagca 41920182  T
Q  208 aatctttaagaatttcaaccttcatttcac 237  Q
    |||||| | ||||||| |||||||||||||    
T  41920181 aatcttcaggaatttctaccttcatttcac 41920152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 35609689 - 35609865
Alignment:
Q  1 gacaaacagaatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgag 100  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  35609689 gacaaacataatcagagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatactcaactgaatcaagcgttggtgcgag 35609788  T
Q  101 tattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggagacacaaagtctataagtgaca 177  Q
    ||||||||||||||||||||||||  ||||||||| ||||||||||| ||||| | |||||||||||||||||||||    
T  35609789 tattcccctttcttggaaaaatagcgggtcaccaatgttatcattcaaatcggaatacacaaagtctataagtgaca 35609865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 178; Significance: 4e-96; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 8 - 237
Target Start/End: Original strand, 35855918 - 35856147
Alignment:
Q  8 agaatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgagtattccc 107  Q
    ||||||| || ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  35855918 agaatcagaggttaaatactctttctcttcacctggaatcagcgacatcataaattcgttaacatgctcaactgaatcaagcgttggtgcgagtattccc 35856017  T
Q  108 ctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggagacacaaagtctataagtgacatcaacggatttgttgtgttagatattagat 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  ||||| ||      
T  35856018 ctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtctgatatcagca 35856117  T
Q  208 aatctttaagaatttcaaccttcatttcac 237  Q
    |||||| | ||||||| |||||||||||||    
T  35856118 aatcttcaggaatttctaccttcatttcac 35856147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 2 - 237
Target Start/End: Original strand, 49710178 - 49710412
Alignment:
Q  2 acaaacagaatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgagt 101  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  49710178 acaaacagaatcagagcttaaatactctttctcttcacctggaatcagcgacatcataaattcgttaacatgctcaactgaatcaagcgttggtgcgagt 49710277  T
Q  102 attcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggagacacaaagtctataagtgacatcaacggatttgttgtgttagata 201  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||  ||||    
T  49710278 attcccctttcttggaaaaatagctggtcaccaaggttatcattcagatcgggatacacaaagtctataagtgacatcaa-ggatttgttgtgtccgata 49710376  T
Q  202 ttagataatctttaagaatttcaaccttcatttcac 237  Q
    | ||  |||||| | ||||||| |||||||||||||    
T  49710377 tcagcaaatcttcaggaatttctaccttcatttcac 49710412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 8 - 237
Target Start/End: Original strand, 38518107 - 38518336
Alignment:
Q  8 agaatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgagtattccc 107  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  38518107 agaatcagagcttaaatactctttctcttcacctggaatcagcgacatcataaattcgttaacatgctcaattgaatcaagcgttggtgcgagtattccc 38518206  T
Q  108 ctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggagacacaaagtctataagtgacatcaacggatttgttgtgttagatattagat 207  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||  ||||| ||      
T  38518207 ctttcttggaaaaatagttggtcaccaaggttatcatttagatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtctgatatcagca 38518306  T
Q  208 aatctttaagaatttcaaccttcatttcac 237  Q
    |||||| | ||||||| |||||||||||||    
T  38518307 aatcttcaggaatttctaccttcatttcac 38518336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 2 - 237
Target Start/End: Original strand, 1860682 - 1860917
Alignment:
Q  2 acaaacagaatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgagt 101  Q
    ||||||||||||| |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1860682 acaaacagaatcagagcttaaatactctttctcttcacccagaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgagt 1860781  T
Q  102 attcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggagacacaaagtctataagtgacatcaacggatttgttgtgttagata 201  Q
    |||||||||||||||||||||||  ||||||||||||||||||||| |||| || |||||||||||||||||||||||||| ||||||||||||  ||||    
T  1860782 attcccctttcttggaaaaatagcgggtcaccaaggttatcattcaaatcgagatacacaaagtctataagtgacatcaacagatttgttgtgtccgata 1860881  T
Q  202 ttagataatctttaagaatttcaaccttcatttcac 237  Q
    | ||  |||||||| ||||||| |||||||||||||    
T  1860882 tgagcaaatctttaggaatttctaccttcatttcac 1860917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 8 - 237
Target Start/End: Complemental strand, 49787036 - 49786807
Alignment:
Q  8 agaatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgagtattccc 107  Q
    ||||||| || ||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||| |||||||||||| |||||||||||||||    
T  49787036 agaatcagaggttaaatactctttctcttcacctggaatcagcgacatcataaattcgttaatatgctcaattgaatcaagcgtgggtgcgagtattccc 49786937  T
Q  108 ctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggagacacaaagtctataagtgacatcaacggatttgttgtgttagatattagat 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||  ||||| ||      
T  49786936 ctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggatacacagagtctataagtgacatcaacggatttgttgtgtctgatatcagca 49786837  T
Q  208 aatctttaagaatttcaaccttcatttcac 237  Q
    |||||| | ||||||| |||||||||||||    
T  49786836 aatcttcaggaatttctaccttcatttcac 49786807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 55559253 - 55559131
Alignment:
Q  1 gacaaacagaatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgag 100  Q
    |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  55559253 gacaaacagaatcagagtttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgttcaactgaatcaagcgttggtgcgag 55559154  T
Q  101 tattcccctttcttggaaaaata 123  Q
    |||||||||||||||||||||||    
T  55559153 tattcccctttcttggaaaaata 55559131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 82 - 237
Target Start/End: Original strand, 13337320 - 13337475
Alignment:
Q  82 aatcaagcgttggtgcgagtattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggagacacaaagtctataagtgacatcaa 181  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||| ||    
T  13337320 aatcaagcgttgatgcgagtattcccctttcttggaaaaatagttggtcaccaaggttatcattcaaatcgagatacacaaagtctataagtgacataaa 13337419  T
Q  182 cggatttgttgtgttagatattagataatctttaagaatttcaaccttcatttcac 237  Q
    ||||||||||||||  ||||| ||  |||||| | ||||||| |||||||||||||    
T  13337420 cggatttgttgtgtccgatatcagcaaatcttcatgaatttctaccttcatttcac 13337475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 237
Target Start/End: Complemental strand, 618270 - 618203
Alignment:
Q  170 aagtgacatcaacggatttgttgtgttagatattagataatctttaagaatttcaaccttcatttcac 237  Q
    ||||||||| ||||||||||||||||  ||||| ||  |||||| | ||||||| |||||||||||||    
T  618270 aagtgacatgaacggatttgttgtgtccgatatgagcaaatcttcaggaatttctaccttcatttcac 618203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 178; Significance: 4e-96; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 8 - 237
Target Start/End: Complemental strand, 6311202 - 6310973
Alignment:
Q  8 agaatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgagtattccc 107  Q
    ||||||| || ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  6311202 agaatcagaggttaaatactctttctcttcacctggaatcagcgacatcataaattcgttaacatgctcaactgaatcaagcgttggtgcgagtattccc 6311103  T
Q  108 ctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggagacacaaagtctataagtgacatcaacggatttgttgtgttagatattagat 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  ||||| ||      
T  6311102 ctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtctgatatcagcg 6311003  T
Q  208 aatctttaagaatttcaaccttcatttcac 237  Q
    |||||| | ||||||| |||||||||||||    
T  6311002 aatcttcaggaatttctaccttcatttcac 6310973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 8 - 237
Target Start/End: Complemental strand, 37390360 - 37390131
Alignment:
Q  8 agaatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgagtattccc 107  Q
    ||||||| || ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  37390360 agaatcagaggttaaatactctttctcttcacctggaatcagcgacatcataaattcgttaacatgctcaactgaatcaagcgttggtgcgagtattccc 37390261  T
Q  108 ctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggagacacaaagtctataagtgacatcaacggatttgttgtgttagatattagat 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  ||||| ||      
T  37390260 ctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtctgatatcagca 37390161  T
Q  208 aatctttaagaatttcaaccttcatttcac 237  Q
    |||||| | ||||||| |||||||||||||    
T  37390160 aatcttcaggaatttctaccttcatttcac 37390131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 36207219 - 36207455
Alignment:
Q  1 gacaaacagaatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgag 100  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| |||||    
T  36207219 gacaaacataatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaattgttggggcgag 36207318  T
Q  101 tattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggagacacaaagtctataagtgacatcaacggatttgttgtgttagat 200  Q
    ||||||||||||||| ||||||||  ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||  |||    
T  36207319 tattcccctttcttgaaaaaatagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtcggat 36207418  T
Q  201 attagataatctttaagaatttcaaccttcatttcac 237  Q
    || ||| |||| | | ||||||| ||||||| |||||    
T  36207419 atgagaaaatcatcaggaatttctaccttcaattcac 36207455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 2 - 237
Target Start/End: Original strand, 16042030 - 16042265
Alignment:
Q  2 acaaacagaatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgagt 101  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  16042030 acaaacagaatcagagcttaaatactctttctcttcacttggaatcagcgacatcataaattcgttaacatgctcaactgaatcaagcgttggtgcgagt 16042129  T
Q  102 attcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggagacacaaagtctataagtgacatcaacggatttgttgtgttagata 201  Q
    ||||||||||||||| ||||||| ||| ||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||  ||||    
T  16042130 attcccctttcttggcaaaatagctgggcaccaaggttatcattcagattgggatacacaaagtctataagcgacatcaacggatttgttgtgtccgata 16042229  T
Q  202 ttagataatctttaagaatttcaaccttcatttcac 237  Q
    | ||  |||||| | ||||||| |||||||||||||    
T  16042230 tcagcaaatcttcaggaatttctaccttcatttcac 16042265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 2453332 - 2453096
Alignment:
Q  1 gacaaacagaatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgag 100  Q
    |||||| ||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  2453332 gacaaatagaatcagagcctaaatactctttctcttcacctggaattagtgacatcatatattcgttaacatgctcaactcaataaagcgttggtgcgag 2453233  T
Q  101 tattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggagacacaaagtctataagtgacatcaacggatttgttgtgttagat 200  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||| ||||| |  ||||||||||||||||||||||||||||||||||||||| |||    
T  2453232 tattcccctttcttggaaaaatagcgggtcaccaaggttatcattcaaatcggaattcacaaagtctataagtgacatcaacggatttgttgtgttcgat 2453133  T
Q  201 attagataatctttaagaatttcaaccttcatttcac 237  Q
    || ||  |||||| | ||||||| |||||||||||||    
T  2453132 atgagcaaatcttcaggaatttctaccttcatttcac 2453096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 18148692 - 18148928
Alignment:
Q  1 gacaaacagaatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgag 100  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  18148692 gacaaacagaataagagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaaatgaatcaagcgttggtgcgag 18148791  T
Q  101 tattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggagacacaaagtctataagtgacatcaacggatttgttgtgttagat 200  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||| || | || |||||||||| ||||||||||||||| ||||||||||||  |||    
T  18148792 tattcccctttcttggaaaaatagcgggtcaccaaggttatcattcaaattgagatacacaaagtcgataagtgacatcaacagatttgttgtgtccgat 18148891  T
Q  201 attagataatctttaagaatttcaaccttcatttcac 237  Q
    || ||| |||||| |  |||||| |||||||||||||    
T  18148892 atgagaaaatcttcataaatttctaccttcatttcac 18148928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 2329173 - 2329403
Alignment:
Q  1 gacaaacagaatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgag 100  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  2329173 gacaaagagaatcagagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcgactgaatcaagcgttggtgcgag 2329272  T
Q  101 tattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggagacacaaagtctataagtgacatcaacggatttgttgtgttagat 200  Q
    ||||||||||||||| ||||||||| | ||||||||||||||||||| ||||||| ||||   ||||||||||||||||||||||||||||||||  |||    
T  2329273 tattcccctttcttgaaaaaatagtggatcaccaaggttatcattcaaatcgggatacac---gtctataagtgacatcaacggatttgttgtgtccgat 2329369  T
Q  201 attagataatctttaagaatttcaaccttcattt 234  Q
    || ||| |||||| | ||||||| ||||||||||    
T  2329370 atgagaaaatcttcaggaatttctaccttcattt 2329403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 48238692 - 48238519
Alignment:
Q  1 gacaaacagaatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgag 100  Q
    |||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48238692 gacaaacagaatcagagcttaaatactctttctcttcgcctggaatcagcgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgag 48238593  T
Q  101 tattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggagacacaaagtctataagtg 174  Q
    |||||| |||||||||||||||||  |||| |||||||||||||||| ||||||| ||||||||||||||||||    
T  48238592 tattcctctttcttggaaaaatagagggtcgccaaggttatcattcaaatcgggatacacaaagtctataagtg 48238519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 48775550 - 48775314
Alignment:
Q  1 gacaaacagaatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgag 100  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  48775550 gacaaactgaatcagagcttaaatactctttctcttcacctggaatcatttacatcatatattcgttaacatgctcaaccgaatcaagcgttggtgcgag 48775451  T
Q  101 tattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggagacacaaagtctataagtgacatcaacggatttgttgtgttagat 200  Q
    ||||||| ||||||||||||| ||  ||||||||| ||||||||||  ||||||| | ||||||| ||| ||||||||||| | |||||||||||  |||    
T  48775450 tattcccttttcttggaaaaagagcaggtcaccaatgttatcattctaatcgggatatacaaagtgtattagtgacatcaaagaatttgttgtgtcggat 48775351  T
Q  201 attagataatctttaagaatttcaaccttcatttcac 237  Q
    || ||  ||||||   ||||||| |||||||||||||    
T  48775350 atgagcaaatcttcgggaatttctaccttcatttcac 48775314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 52500673 - 52500795
Alignment:
Q  1 gacaaacagaatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgag 100  Q
    |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  52500673 gacaaacagaatcagagtttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgttcaactgaatcaagcgttggtgcgag 52500772  T
Q  101 tattcccctttcttggaaaaata 123  Q
    |||||||||||||||||||||||    
T  52500773 tattcccctttcttggaaaaata 52500795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 117 - 235
Target Start/End: Original strand, 48233498 - 48233616
Alignment:
Q  117 aaaaatagttggtcaccaaggttatcattcagatcgggagacacaaagtctataagtgacatcaacggatttgttgtgttagatattagataatctttaa 216  Q
    ||||||||  |||| |||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||| ||||| ||  |||||| |     
T  48233498 aaaaatagagggtcgccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcagcggatttgttgtgttcgatatgagtaaatcttcag 48233597  T
Q  217 gaatttcaaccttcatttc 235  Q
    ||||||| |||||||||||    
T  48233598 gaatttctaccttcatttc 48233616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 174; Significance: 1e-93; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 8 - 237
Target Start/End: Original strand, 32782 - 33011
Alignment:
Q  8 agaatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgagtattccc 107  Q
    ||||||| || ||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  32782 agaatcagaggttaaatactctttctcttcacttggaatcagcgacatcataaattcgttaacatgctcaactgaatcaagcgttggtgcgagtattccc 32881  T
Q  108 ctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggagacacaaagtctataagtgacatcaacggatttgttgtgttagatattagat 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| ||      
T  32882 ctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggatacacaaagtccataagtgacatcaacggatttgttgtgtttgatatcagca 32981  T
Q  208 aatctttaagaatttcaaccttcatttcac 237  Q
    |||||| | ||||||| |||||||||||||    
T  32982 aatcttcaggaatttctaccttcatttcac 33011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 2 - 237
Target Start/End: Original strand, 10110605 - 10110840
Alignment:
Q  2 acaaacagaatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgagt 101  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10110605 acaaacataatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgagt 10110704  T
Q  102 attcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggagacacaaagtctataagtgacatcaacggatttgttgtgttagata 201  Q
    |||||||||||||||||||||||  ||||||||||||||||||||| |||| || ||||||||||| |||||||||||||| ||||||||| ||  ||||    
T  10110705 attcccctttcttggaaaaatagcgggtcaccaaggttatcattcaaatcgagatacacaaagtctgtaagtgacatcaacagatttgttgcgtctgata 10110804  T
Q  202 ttagataatctttaagaatttcaaccttcatttcac 237  Q
    | ||  |||||| | ||||||| |||||||||||||    
T  10110805 tgagcaaatcttcaggaatttctaccttcatttcac 10110840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 50410176 - 50410398
Alignment:
Q  1 gacaaacagaatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgag 100  Q
    |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  50410176 gacaaagagaatcagagcttaaatactctttctcttcacctggaatcagtgacatcatatatttgttaacatgctcgactgaatcaagcgttggtgcgag 50410275  T
Q  101 tattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggagacacaaagtctataagtgacatcaacggatttgttgtgttagat 200  Q
    ||||||||||||||| ||||||||| |||| |||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||  |||    
T  50410276 tattcccctttcttgaaaaaatagtgggtcgccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcagcggatttgttgtgtccgat 50410375  T
Q  201 attagataatctttaagaatttc 223  Q
    || ||| |||||| | |||||||    
T  50410376 atgagaaaatcttcaggaatttc 50410398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 13530043 - 13530279
Alignment:
Q  1 gacaaacagaatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgag 100  Q
    ||||| ||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||| |||||||||||    
T  13530043 gacaagcagaaccagagcttaaatactctttctcttcacctggactcagtgacatcatatattcgttaaaatgctcaactgaatgaagtgttggtgcgag 13530142  T
Q  101 tattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggagacacaaagtctataagtgacatcaacggatttgttgtgttagat 200  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||  |||    
T  13530143 tattcccctttcttggaaaaatagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtctgat 13530242  T
Q  201 attagataatctttaagaatttcaaccttcatttcac 237  Q
    || |   ||||||  |||||||| |||||||||||||    
T  13530243 atgaccaaatcttctagaatttctaccttcatttcac 13530279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 2 - 237
Target Start/End: Original strand, 10000412 - 10000647
Alignment:
Q  2 acaaacagaatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgagt 101  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10000412 acaaacataatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgagt 10000511  T
Q  102 attcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggagacacaaagtctataagtgacatcaacggatttgttgtgttagata 201  Q
    ||||| |||||||||||||||||  ||||||||||||||||||||| |||| || ||||||||||| ||||||| |||||| |||||||||  |  ||||    
T  10000512 attcctctttcttggaaaaatagcgggtcaccaaggttatcattcaaatcgagatacacaaagtctgtaagtgatatcaacagatttgttgcatctgata 10000611  T
Q  202 ttagataatctttaagaatttcaaccttcatttcac 237  Q
    | ||  |||||| | ||||||| |||||||||||||    
T  10000612 tgagcaaatcttcaggaatttctaccttcatttcac 10000647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 52918070 - 52918264
Alignment:
Q  1 gacaaacagaatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgag 100  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  52918070 gacaaacaaaatcagagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcggg 52918169  T
Q  101 tattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggagacacaaagtctataagtgacatcaacggatttgttgtgt 195  Q
    ||||||||||||||||||||||||   |||||||||||||||||||| ||||||| |||| ||||||||||||| ||||||| ||||||||||||    
T  52918170 tattcccctttcttggaaaaatagcgagtcaccaaggttatcattcaaatcgggatacacgaagtctataagtggcatcaacagatttgttgtgt 52918264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 2 - 192
Target Start/End: Original strand, 10237561 - 10237750
Alignment:
Q  2 acaaacagaatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgagt 101  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10237561 acaaacataatcaaagcttaa-tactctttctcttcacctggaatcagtaacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgagt 10237659  T
Q  102 attcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggagacacaaagtctataagtgacatcaacggatttgttg 192  Q
    |||||||||||||| ||||||||  ||||||||||||||||||||| |||| || ||||||||||| |||||||||||||| |||||||||    
T  10237660 attcccctttcttgaaaaaatagcgggtcaccaaggttatcattcaaatcgagatacacaaagtctgtaagtgacatcaacagatttgttg 10237750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 10968996 - 10968802
Alignment:
Q  1 gacaaacagaatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgag 100  Q
    |||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  10968996 gacaaacaaaataagagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctaaactgaatcaagcgttggtgcgag 10968897  T
Q  101 tattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggagacacaaagtctataagtgacatcaacggatttgttgtgt 195  Q
    |||||||||| ||| |||||||||  |||||| ||| |||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||    
T  10968896 tattccccttgcttagaaaaatagcaggtcacgaagtttatcattcaaatcgggatacacaaagtctataagtggcatcaacggatttgttgtgt 10968802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 9 - 237
Target Start/End: Original strand, 11368659 - 11368888
Alignment:
Q  9 gaatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgagtattcccc 108  Q
    |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||     
T  11368659 gaatcagagcttaaatactctttctcttcacctggaatcactgacatcatatattcgttaacatgctcaaccgaatcaagcgttggtgcgagtattccct 11368758  T
Q  109 tttcttgg-aaaaatagttggtcaccaaggttatcattcagatcgggagacacaaagtctataagtgacatcaacggatttgttgtgttagatattagat 207  Q
    |||||||| ||||| ||  ||||||||| ||||||||||| ||||||| | ||||||||||| |||||||||||||||||||||||||  ||||| ||      
T  11368759 tttcttggaaaaaagagcgggtcaccaatgttatcattcaaatcgggatatacaaagtctatgagtgacatcaacggatttgttgtgtcggatatgagca 11368858  T
Q  208 aatctttaagaatttcaaccttcatttcac 237  Q
    ||||||   ||||||| || ||||||||||    
T  11368859 aatcttcgggaatttctacattcatttcac 11368888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 11362262 - 11362455
Alignment:
Q  1 gacaaacagaatcaaagcttaaatac-tctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcga 99  Q
    ||||||| |||||| |||||||| |  |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  11362262 gacaaactgaatcagagcttaaaaaaatctttctcttcacctggaatcactgacatcatatattcgttaacatgctcaaccgaatcaagcgttggtgcga 11362361  T
Q  100 gtattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggagacacaaagtctataagtgacatcaacggatttgttgt 193  Q
    |||||||| ||||||||||||||||| ||||||||| ||||||||| | ||||||| | ||||||||||| ||||||||||||| |||||||||    
T  11362362 gtattcccttttcttggaaaaatagtgggtcaccaatgttatcatttaaatcgggatatacaaagtctattagtgacatcaacgaatttgttgt 11362455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 46913075 - 46913245
Alignment:
Q  1 gacaaacagaatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgag 100  Q
    |||||||| |||||||||||||||||| ||| ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46913075 gacaaacataatcaaagcttaaatactatttttcttcacctggaattggtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgag 46913174  T
Q  101 tattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggagacacaaagtctataa 171  Q
    ||||| ||||||||||||||||||  |||| |||| ||||||||||| ||||||| |||||||||||||||    
T  46913175 tattctcctttcttggaaaaatagcgggtcgccaaagttatcattcaaatcgggatacacaaagtctataa 46913245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 47692973 - 47693115
Alignment:
Q  1 gacaaacagaatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgag 100  Q
    |||||||||||||| || |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  47692973 gacaaacagaatcagaggttaaatactctttctcttcacctggaattagtgacatcatgtattcgttaacatgctcaactgaatcaagcgttggtgcgag 47693072  T
Q  101 tattcccctttcttggaaaaatagttggtcaccaaggttatca 143  Q
     ||||||||||||||| ||||| || |||||||||||||||||    
T  47693073 gattcccctttcttgggaaaattgtgggtcaccaaggttatca 47693115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 10038644 - 10038807
Alignment:
Q  1 gacaaacagaatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgag 100  Q
    |||||||||||| | |||||||||| | |||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||| ||||| |||||    
T  10038644 gacaaacagaatgagagcttaaataatatttctcttcacctggaatcagtgacatcatatattcattaatatgctcaattgaatcaagtgttggcgcgag 10038743  T
Q  101 tattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggagacacaaag 164  Q
    ||||||||||||||||||||||||  |||||| |||||||||||||| || |||| ||||||||    
T  10038744 tattcccctttcttggaaaaatagcgggtcactaaggttatcattcaaattgggatacacaaag 10038807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 186558 - 186794
Alignment:
Q  1 gacaaacagaatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgag 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  186558 gacaaacagaatcagagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcagctgaatcaagcgttggtgcgag 186657  T
Q  101 tattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggagacacaaagtctataagtgacatcaacggatttgttgtgttagat 200  Q
    ||||||||||| ||||||||||||  ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||  |||    
T  186658 tattcccctttattggaaaaatagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacagatttgttgtgtacgat 186757  T
Q  201 attagataatctttaagaatttcaaccttcatttcac 237  Q
    || ||  |||||| | ||||||| |||||||||||||    
T  186758 atgagcaaatcttcaggaatttctaccttcatttcac 186794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 170; Significance: 2e-91; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 18344129 - 18344366
Alignment:
Q  1 gacaaacagaatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgag 100  Q
    |||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||    
T  18344129 gacaaatagaatcaaagcttaaatactctttctcttcgcctggaatcagcgacatcatatattcgtcaacatgctcaactgaatcaagcgttggtgcaag 18344228  T
Q  101 tattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggagacacaaagtctataagtgacatcaacggatttgttgtgttagat 200  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||  |||    
T  18344229 tattcccctttcttggaaaaatagatggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatgaacggatttgttgtgtccgat 18344328  T
Q  201 attagataatctttaagaatttcaaccttcatttcact 238  Q
    || ||  |||||| | ||||||| ||||||||||||||    
T  18344329 atgagcaaatcttcaggaatttctaccttcatttcact 18344366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 19 - 237
Target Start/End: Complemental strand, 29640225 - 29640007
Alignment:
Q  19 ttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgagtattcccctttcttggaa 118  Q
    ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29640225 ttaaatactctttctcttcacctggaatcagcgacatcataaattcgttaacatgctcaactgaatcaagcgttggtgcgagtattcccctttcttggaa 29640126  T
Q  119 aaatagttggtcaccaaggttatcattcagatcgggagacacaaagtctataagtgacatcaacggatttgttgtgttagatattagataatctttaaga 218  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||| | ||||| ||  |||||| | ||    
T  29640125 aaatagttggtcaccaaggttatcattcagatcaggatacacaaagtctataagtgacatcaacagatttgttgtggttgatatcagcaaatcttcagga 29640026  T
Q  219 atttcaaccttcatttcac 237  Q
    ||||| |||||||||||||    
T  29640025 atttctaccttcatttcac 29640007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 2202394 - 2202158
Alignment:
Q  1 gacaaacagaatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgag 100  Q
    |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||    
T  2202394 gacaaatagaatcagagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgttctactgaattaagcgttggtgcgag 2202295  T
Q  101 tattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggagacacaaagtctataagtgacatcaacggatttgttgtgttagat 200  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||| |||    
T  2202294 tattcccctttcttggaaaaatagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttattgtgttcgat 2202195  T
Q  201 attagataatctttaagaatttcaaccttcatttcac 237  Q
    || ||  ||||||   ||||||| || ||||||||||    
T  2202194 atgagcaaatcttcgggaatttctacattcatttcac 2202158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 30881331 - 30881567
Alignment:
Q  1 gacaaacagaatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgag 100  Q
    ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  30881331 gacaaacagaaccagagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaacagaatcaagcgttggtgcgag 30881430  T
Q  101 tattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggagacacaaagtctataagtgacatcaacggatttgttgtgttagat 200  Q
    |||| |||||||||||||||||||  ||||||||||||||||||| | |||| || |||||| ||||||||||||||||||||||||||||||||  |||    
T  30881431 tatttccctttcttggaaaaatagcgggtcaccaaggttatcatttaaatcgagatacacaatgtctataagtgacatcaacggatttgttgtgtccgat 30881530  T
Q  201 attagataatctttaagaatttcaaccttcatttcac 237  Q
    || ||  |||||| | ||||||| |||||||||||||    
T  30881531 atgagcaaatcttcaggaatttctaccttcatttcac 30881567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 10187548 - 10187742
Alignment:
Q  1 gacaaacagaatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgag 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||    
T  10187548 gacaaacagaatcatagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaattgaatcaagtgttggagcgag 10187647  T
Q  101 tattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggagacacaaagtctataagtgacatcaacggatttgttgtgt 195  Q
    ||||||| ||||||||||||||||  ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||    
T  10187648 tattcccttttcttggaaaaatagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggattttttgtgt 10187742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 19 - 237
Target Start/End: Complemental strand, 31510396 - 31510178
Alignment:
Q  19 ttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgagtattcccctttcttggaa 118  Q
    ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  31510396 ttaaatactctttctcttcacctggaatcagcgacatcataaattcgttaacatgctcaactgaatcaagcgttggtgcgagtattcccctttcttgaaa 31510297  T
Q  119 aaatagttggtcaccaaggttatcattcagatcgggagacacaaagtctataagtgacatcaacggatttgttgtgttagatattagataatctttaaga 218  Q
    ||||||||||||||||||||||||||||||||  ||| |||||||||||||||||||||||||| ||||||||||| | ||||| ||  |||||| |  |    
T  31510296 aaatagttggtcaccaaggttatcattcagattaggatacacaaagtctataagtgacatcaacagatttgttgtggttgatatcagcaaatcttaagaa 31510197  T
Q  219 atttcaaccttcatttcac 237  Q
    ||||| |||||||||||||    
T  31510196 atttctaccttcatttcac 31510178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 2 - 238
Target Start/End: Original strand, 15333648 - 15333884
Alignment:
Q  2 acaaacagaatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgagt 101  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  15333648 acaaacagaatcagagcctaaatactctttctcttcacctggaatcagcgacatcataaattcgttaacatgctcaactgaatcaagtgttggtgcgagt 15333747  T
Q  102 attcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggagacacaaagtctataagtgacatcaacggatttgttgtgttagata 201  Q
    |||||| ||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||  ||  ||||    
T  15333748 attcccatttgttggaaaaatagctggtcaccaaggttatcattcagatcgggatacacaaagtctattagtgacatcaacggatttgttacgtacgata 15333847  T
Q  202 ttagataatctttaagaatttcaaccttcatttcact 238  Q
    | |   |||||| | ||||||| ||||||||||||||    
T  15333848 tcaacaaatcttcaggaatttctaccttcatttcact 15333884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 3 - 131
Target Start/End: Original strand, 12517394 - 12517522
Alignment:
Q  3 caaacagaatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgagta 102  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| | ||    
T  12517394 caaacagaatcagagcttaaatactctttctcttcacctggaatcagcgacatcataaattcgttaacatgctcaactgaatcaagcgttggtgcaaata 12517493  T
Q  103 ttcccctttcttggaaaaatagttggtca 131  Q
    |||||||||||||||||||||| ||||||    
T  12517494 ttcccctttcttggaaaaatagctggtca 12517522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1139 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: scaffold1139
Description:

Target: scaffold1139; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 1004 - 1240
Alignment:
Q  1 gacaaacagaatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgag 100  Q
    |||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  1004 gacaaacaaaatcagagcttaaatactctttctcttcacttggaatcagtgacatcatatattcgttaacatgctcgactgaattaagcgttggtgcgag 1103  T
Q  101 tattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggagacacaaagtctataagtgacatcaacggatttgttgtgttagat 200  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||  |||    
T  1104 tattcccctttcttggaaaaatagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtccgat 1203  T
Q  201 attagataatctttaagaatttcaaccttcatttcac 237  Q
    || ||  |||||| | ||||||| |||||||||||||    
T  1204 atgagcaaatcttcaggaatttctaccttcatttcac 1240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 2 - 237
Target Start/End: Complemental strand, 321550 - 321315
Alignment:
Q  2 acaaacagaatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgagt 101  Q
    ||||||||||||| ||||||||||||||||||||||||||| |||||| || |||||| ||||||||||||||||||||||||||||| |||||||||||    
T  321550 acaaacagaatcagagcttaaatactctttctcttcacctgaaatcagcgatatcataaattcgttaacatgctcaactgaatcaagcattggtgcgagt 321451  T
Q  102 attcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggagacacaaagtctataagtgacatcaacggatttgttgtgttagata 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||  ||||    
T  321450 attcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggatacaaaaagtctataagtgacatcaacggatttgttttgtccgata 321351  T
Q  202 ttagataatctttaagaatttcaaccttcatttcac 237  Q
    | ||  |||||| | ||||||| |||||||||||||    
T  321350 tcagcaaatcttcaggaatttctaccttcatttcac 321315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 8 - 237
Target Start/End: Complemental strand, 49144 - 48915
Alignment:
Q  8 agaatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgagtattccc 107  Q
    ||||||| || ||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||| |||||||||||| |||||||||||||||    
T  49144 agaatcagaggttaaatactctttctcttcacctagaatcagcgacatcataaattcgttaacatgctcaattgaatcaagcgtgggtgcgagtattccc 49045  T
Q  108 ctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggagacacaaagtctataagtgacatcaacggatttgttgtgttagatattagat 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||| ||      
T  49044 ctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggatacacagagtctataagtgacatcaacggatttgttgtgtttgatatcagca 48945  T
Q  208 aatctttaagaatttcaaccttcatttcac 237  Q
    |||||| | ||||||| |||||||||||||    
T  48944 aatcttcaggaatttctaccttcatttcac 48915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0073 (Bit Score: 164; Significance: 9e-88; HSPs: 2)
Name: scaffold0073
Description:

Target: scaffold0073; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 2 - 237
Target Start/End: Original strand, 31938 - 32172
Alignment:
Q  2 acaaacagaatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgagt 101  Q
    ||||||||||||| || |||||||||||||||||||||||||||||||  |||||||| ||||||||||||||||||||||||||||||||||||| |||    
T  31938 acaaacagaatcagagtttaaatactctttctcttcacctggaatcagcaacatcataaattcgttaacatgctcaactgaatcaagcgttggtgcaagt 32037  T
Q  102 attcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggagacacaaagtctataagtgacatcaacggatttgttgtgttagata 201  Q
    || |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  ||||    
T  32038 at-cccctttcttggaaaaatagctggtcaccaaggttatcattcagatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtccgata 32136  T
Q  202 ttagataatctttaagaatttcaaccttcatttcac 237  Q
    | ||  |||||| | ||||||| |||||||||||||    
T  32137 tcagcaaatcttcaggaatttctaccttcatttcac 32172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0073; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 2 - 195
Target Start/End: Original strand, 19462 - 19655
Alignment:
Q  2 acaaacagaatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgagt 101  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||| ||| ||||||||||||||||||||||||| |||||||    
T  19462 acaaacagaatcagagcttaaatactctttctcttcacctggaatcagcgacatcataaatttgttgacatgctcaactgaatcaagcgttgatgcgagt 19561  T
Q  102 attcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggagacacaaagtctataagtgacatcaacggatttgttgtgt 195  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||    
T  19562 attcccctttcttggaaaaatagctggtcaccaaggttatcattcagatcgggatacacaaagtttataagtgacatcaacagatttgttgtgt 19655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 5474 - 5239
Alignment:
Q  1 gacaaacagaatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgag 100  Q
    |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5474 gacaaacagaatcagagcttaaatactctttctcttcacctgaaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgag 5375  T
Q  101 tattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggagacacaaagtctataagtgacatcaacggatttgttgtgttagat 200  Q
    |||||||||||||||| |||||||  ||||||||||||||||||||| |||| || |||||||||||||||||||||||||  ||||||||||||  |||    
T  5374 tattcccctttcttgg-aaaatagcgggtcaccaaggttatcattcaaatcgagatacacaaagtctataagtgacatcaatagatttgttgtgtccgat 5276  T
Q  201 attagataatctttaagaatttcaaccttcatttcac 237  Q
    || ||  |||||| | ||||||| |||||||||||||    
T  5275 atgagcaaatcttcaggaatttctaccttcatttcac 5239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 19010 - 19245
Alignment:
Q  1 gacaaacagaatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgag 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19010 gacaaacagaatcagagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgag 19109  T
Q  101 tattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggagacacaaagtctataagtgacatcaacggatttgttgtgttagat 200  Q
    ||||||||||| ||||||||||||  ||||||||||||||||||||| |||  || ||||||||||||||||||||||||||  |||||||||||  |||    
T  19110 tattccccttttttggaaaaatagcgggtcaccaaggttatcattcaaatcaagatacacaaagtctataagtgacatcaacatatttgttgtgtccgat 19209  T
Q  201 attagataatctttaagaatttcaaccttcatttca 236  Q
    || ||  |||||| |  |||||| ||||||||||||    
T  19210 atgagcaaatcttcagaaatttctaccttcatttca 19245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0550 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: scaffold0550
Description:

Target: scaffold0550; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 2 - 236
Target Start/End: Complemental strand, 786 - 552
Alignment:
Q  2 acaaacagaatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgagt 101  Q
    ||||||||||||| || ||||||||||||||| ||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  786 acaaacagaatcagaggttaaatactctttcttttcacctggaatcagcgacatcataaattcattaacatgctcaactgaatcaagcgttggtgcgagt 687  T
Q  102 attcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggagacacaaagtctataagtgacatcaacggatttgttgtgttagata 201  Q
    |||||||||| |||||||||||| |||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||| ||||||||||  ||||    
T  686 attcccctttattggaaaaatagctggtcaccaaggttatcatttagatcgggatacacaaagtttataagtgacatcaacgggtttgttgtgtctgata 587  T
Q  202 ttagataatctttaagaatttcaaccttcatttca 236  Q
    | ||  |||||| | ||||||| ||||||||||||    
T  586 tcagcaaatcttcaggaatttctaccttcatttca 552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0356 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: scaffold0356
Description:

Target: scaffold0356; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 3 - 237
Target Start/End: Complemental strand, 18082 - 17855
Alignment:
Q  3 caaacagaatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgagta 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  18082 caaacagaatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactaaatcaagcgttggtgcgagta 17983  T
Q  103 ttcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggagacacaaagtctataagtgacatcaacggatttgttgtgttagatat 202  Q
    |||||||||||||       ||  | ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||  |||||    
T  17982 ttcccctttcttg-------agcggatcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtccgatat 17890  T
Q  203 tagataatctttaagaatttcaaccttcatttcac 237  Q
     ||  |||||| | ||| ||| |||||||||||||    
T  17889 gagcaaatcttcaggaacttctaccttcatttcac 17855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 182815 - 183051
Alignment:
Q  1 gacaaacagaatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgag 100  Q
    ||||||| |||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  182815 gacaaactgaatcagagcttaaatactctttctcttcacttggaatcactgacatcatatattcgttaacatgctcaaccgaatcaagcgttggtgcgag 182914  T
Q  101 tattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggagacacaaagtctataagtgacatcaacggatttgttgtgttagat 200  Q
    ||||||| ||||||||||||| ||| ||||||||| | ||||||||| ||||||| | ||||||||||| ||||||||||||| ||||||||| |  |||    
T  182915 tattcccttttcttggaaaaagagtgggtcaccaatgatatcattcaaatcgggatatacaaagtctattagtgacatcaacgaatttgttgtatcggat 183014  T
Q  201 attagataatctttaagaatttcaaccttcatttcac 237  Q
    || ||  ||||||   ||||||| |||||||||||||    
T  183015 atgagcaaatcttcgggaatttctaccttcatttcac 183051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 165534 - 165727
Alignment:
Q  1 gacaaacagaatcaaagcttaaatac-tctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcga 99  Q
    ||||||| |||||| |||||||| |  |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  165534 gacaaactgaatcagagcttaaaaaaatctttctcttcacctggaatcactgacatcatatattcgttaacatgctcaaccgaatcaagcgttggtgcga 165633  T
Q  100 gtattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggagacacaaagtctataagtgacatcaacggatttgttgt 193  Q
    |||||||| ||||||||||||||||| ||||||||| ||||||||| | ||||||| | ||||||||||| ||||||||||||| |||||||||    
T  165634 gtattcccttttcttggaaaaatagtgggtcaccaatgttatcatttaaatcgggatatacaaagtctattagtgacatcaacgaatttgttgt 165727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 4 - 195
Target Start/End: Original strand, 16691 - 16882
Alignment:
Q  4 aaacagaatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgagtat 103  Q
    ||||||||||| |||||||| ||||||||||||||||| |||||||||| ||||||||| ||||||||| ||| ||| ||| ||||||||||||||||||    
T  16691 aaacagaatcatagcttaaaaactctttctcttcacctagaatcagtgaaatcatatatgcgttaacatactccactaaattaagcgttggtgcgagtat 16790  T
Q  104 tcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggagacacaaagtctataagtgacatcaacggatttgttgtgt 195  Q
    |||||||||||||||||||||  ||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||    
T  16791 tcccctttcttggaaaaatagcgggtcaccaaagttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgt 16882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 28849 - 28727
Alignment:
Q  1 gacaaacagaatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttggtgcgag 100  Q
    |||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  28849 gacaaacagaatcagagtttaaatactttttctcttcacctggaatcagtgacatcatatattcgttaacatgttcaactgaatcaagcgttggtgcgag 28750  T
Q  101 tattcccctttcttggaaaaata 123  Q
    |||||||||||||||||||||||    
T  28749 tattcccctttcttggaaaaata 28727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0888 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: scaffold0888
Description:

Target: scaffold0888; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 117 - 24
Alignment:
Q  1 gacaaacagaatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaagcgttgg 94  Q
    |||| ||| ||||| |||||||||||||||||||  |||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  117 gacatacaaaatcagagcttaaatactctttctcgccacctgaaatcagtgacatcgtatattcgttaacatgctcaactgaatcaagccttgg 24  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1424 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold1424
Description:

Target: scaffold1424; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 1655 - 1703
Alignment:
Q  4 aaacagaatcaaagcttaaatactctttctcttcacctggaatcagtga 52  Q
    ||||| ||||| || |||||||| |||||||||||||||||||||||||    
T  1655 aaacataatcagagtttaaatacgctttctcttcacctggaatcagtga 1703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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