View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11516_low_39 (Length: 236)
Name: NF11516_low_39
Description: NF11516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11516_low_39 |
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Alignment Details
Target: chr7 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 52 - 223
Target Start/End: Original strand, 48659114 - 48659285
Alignment:
| Q |
52 |
ttacaatgggttctggaattttctcatgatgttcnnnnnnncaagaagttatagctcaatcaacggcagaggcagaatatatcgctgctgctgctgcggt |
151 |
Q |
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|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
48659114 |
ttacaatgggttctggaattttctcatggtgttcaaaaaaacaagaagttatagctcaatcaacggcagaggcagaatatatcgctgttgctgctgcggt |
48659213 |
T |
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| Q |
152 |
gaaccaagctatttggatcagaaagctcatgacagacttgcacatgattcaaacagaaagtactaagatatt |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48659214 |
gaaccaagctatttggatcagaaagctcatgacagacttgcacatgattcaaacagaaagtactaagatatt |
48659285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 52 - 223
Target Start/End: Original strand, 9309867 - 9310038
Alignment:
| Q |
52 |
ttacaatgggttctggaattttctcatgatgttcnnnnnnncaagaagttatagctcaatcaacggcagaggcagaatatatcgctgctgctgctgcggt |
151 |
Q |
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|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
9309867 |
ttacaatgggttctggaattttctcatggtgttcaaaaaaacaagaagttatagctcaatcaacggcagaggcagaatatatcgctgttgctgctgcggt |
9309966 |
T |
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| Q |
152 |
gaaccaagctatttggatcagaaagctcatgacagacttgcacatgattcaaacagaaagtactaagatatt |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9309967 |
gaaccaagctatttggatcagaaagctcatgacagacttgcacatgattcaaacagaaagtactaagatatt |
9310038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 52 - 223
Target Start/End: Original strand, 31084644 - 31084815
Alignment:
| Q |
52 |
ttacaatgggttctggaattttctcatgatgttcnnnnnnncaagaagttatagctcaatcaacggcagaggcagaatatatcgctgctgctgctgcggt |
151 |
Q |
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||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |
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| T |
31084644 |
ttacaatgggttctggagttttctcatggtgttcaaaaaaacaagaagttatagctcaatcaacggcagaggcagaatatatcgttgttgctgctgcggt |
31084743 |
T |
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| Q |
152 |
gaaccaagctatttggatcagaaagctcatgacagacttgcacatgattcaaacagaaagtactaagatatt |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31084744 |
gaaccaagctatttggatcagaaagctcatgacagacttgcacatgattcaaacagaaagtactaagatatt |
31084815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 175
Target Start/End: Original strand, 22135048 - 22135120
Alignment:
| Q |
103 |
tagctcaatcaacggcagaggcagaatatatcgctgctgctgctgcggtgaaccaagctatttggatcagaaa |
175 |
Q |
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|||||||||| ||||||||||| |||||||| | || || ||||| | ||||||||||||||| ||||||| |
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| T |
22135048 |
tagctcaatctacggcagaggctgaatatatttcagcagcagctgctgcaaaccaagctatttggctcagaaa |
22135120 |
T |
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