View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11516_low_40 (Length: 229)
Name: NF11516_low_40
Description: NF11516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11516_low_40 |
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| [»] scaffold0194 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 14 - 213
Target Start/End: Original strand, 36134222 - 36134421
Alignment:
| Q |
14 |
atgaatagttttgcgacatacacaagatttattttcatcattaggtcattaaattccattatatcgtatctaatccaatgatgagagttattgattcaat |
113 |
Q |
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| T |
36134222 |
atgaatagttttgcgacatacacaagatttattttcatcattaggtcattaaattccattatatcgtaactaatccaatgatgagagttattgattcaat |
36134321 |
T |
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| Q |
114 |
ggtaaaaacaaacttgtgcacaatacattacaaaaaagagtaatattatttttaatagaagtaagtatattcaataacttacttttcaatgcatgcgttg |
213 |
Q |
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| T |
36134322 |
ggtaaaaacaaacttgtgcacaatacattacagaaaagagtaatattatttttaatagaagtaagtatattcaataacttacttttcaatgcatgcgttg |
36134421 |
T |
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Target: scaffold0194 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0194
Description:
Target: scaffold0194; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 129
Target Start/End: Complemental strand, 23379 - 23336
Alignment:
| Q |
86 |
atccaatgatgagagttattgattcaatggtaaaaacaaacttg |
129 |
Q |
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| T |
23379 |
atccaatgatgagacttattgattcaatggtgaaaacaaacttg |
23336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 131
Target Start/End: Original strand, 38406413 - 38406460
Alignment:
| Q |
84 |
taatccaatgatgagagttattgattcaatggtaaaaacaaacttgtg |
131 |
Q |
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| T |
38406413 |
taatccaatgataagatttattgattcaatagtaaaaacgaacttgtg |
38406460 |
T |
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