View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11516_low_41 (Length: 222)

Name: NF11516_low_41
Description: NF11516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11516_low_41
NF11516_low_41
[»] chr4 (6 HSPs)
chr4 (1-72)||(51246621-51246692)
chr4 (1-72)||(28787959-28788030)
chr4 (1-72)||(17525519-17525590)
chr4 (1-61)||(28787018-28787078)
chr4 (3-72)||(24856236-24856305)
chr4 (1-66)||(24853351-24853416)
[»] chr5 (5 HSPs)
chr5 (1-72)||(5046447-5046518)
chr5 (1-72)||(5047218-5047289)
chr5 (1-72)||(5047989-5048060)
chr5 (1-30)||(5664848-5664877)
chr5 (4-64)||(5663780-5663840)
[»] scaffold0406 (1 HSPs)
scaffold0406 (1-72)||(6279-6350)
[»] chr7 (3 HSPs)
chr7 (1-72)||(22622403-22622474)
chr7 (172-210)||(19937853-19937891)
chr7 (172-210)||(19968992-19969030)
[»] chr3 (3 HSPs)
chr3 (1-61)||(12738201-12738261)
chr3 (1-72)||(12739341-12739412)
chr3 (27-72)||(15023058-15023103)
[»] chr2 (1 HSPs)
chr2 (1-71)||(20978869-20978940)
[»] chr8 (1 HSPs)
chr8 (1-63)||(1275229-1275291)


Alignment Details
Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 51246692 - 51246621
Alignment:
Q  1 ttgaatacaattgcacccatataagtctatttataggtgcctgtaaatgtttctagaactagaatattctag 72  Q
    ||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||| |||||    
T  51246692 ttgaatacaattgcacccatataagtctacttataggtgcttgtagatgtttctagaactagaataatctag 51246621  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 28788030 - 28787959
Alignment:
Q  1 ttgaatacaattgcacccatataagtctatttataggtgcctgtaaatgtttctagaactagaatattctag 72  Q
    ||||||||||||||||||||||| |||||||||||||||  || | |||||||||||||||||||| |||||    
T  28788030 ttgaatacaattgcacccatatatgtctatttataggtgtttgaagatgtttctagaactagaataatctag 28787959  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 17525519 - 17525590
Alignment:
Q  1 ttgaatacaattgcacccatataagtctatttataggtgcctgtaaatgtttctagaactagaatattctag 72  Q
    |||||||||||| ||| |||||||||||||||||| | || |||| |||||||||||||||||||| |||||    
T  17525519 ttgaatacaatttcacacatataagtctatttataagcgcttgtagatgtttctagaactagaataatctag 17525590  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 28787078 - 28787018
Alignment:
Q  1 ttgaatacaattgcacccatataagtctatttataggtgcctgtaaatgtttctagaacta 61  Q
    ||||||||||||||||| ||||| |||||||||||||||| || | |||||||||||||||    
T  28787078 ttgaatacaattgcaccaatatatgtctatttataggtgcttgaagatgtttctagaacta 28787018  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 72
Target Start/End: Complemental strand, 24856305 - 24856236
Alignment:
Q  3 gaatacaattgcacccatataagtctatttataggtgcctgtaaatgtttctagaactagaatattctag 72  Q
    ||||||||||||| ||  |||||||||||||||||||   | |||||||||||||||||||||| |||||    
T  24856305 gaatacaattgcatcctaataagtctatttataggtgttagaaaatgtttctagaactagaataatctag 24856236  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 24853416 - 24853351
Alignment:
Q  1 ttgaatacaattgcacccatataagtctatttataggtgcctgtaaatgtttctagaactagaata 66  Q
    ||||||||||||||| ||| |||||||||||||||||||   | | |||||| |||||||||||||    
T  24853416 ttgaatacaattgcatccaaataagtctatttataggtgttagaagatgtttttagaactagaata 24853351  T

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Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 5046518 - 5046447
Alignment:
Q  1 ttgaatacaattgcacccatataagtctatttataggtgcctgtaaatgtttctagaactagaatattctag 72  Q
    |||||||||||||||| ||||||||||||||||||||||| |||| ||||||||| |||||||||| |||||    
T  5046518 ttgaatacaattgcactcatataagtctatttataggtgcttgtagatgtttctaaaactagaataatctag 5046447  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 5047289 - 5047218
Alignment:
Q  1 ttgaatacaattgcacccatataagtctatttataggtgcctgtaaatgtttctagaactagaatattctag 72  Q
    |||||||||||||||| ||||||||| ||||||||||||| |||| ||||||||| |||||||||| |||||    
T  5047289 ttgaatacaattgcactcatataagtatatttataggtgcttgtagatgtttctaaaactagaataatctag 5047218  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 5048060 - 5047989
Alignment:
Q  1 ttgaatacaattgcacccatataagtctatttataggtgcctgtaaatgtttctagaactagaatattctag 72  Q
    |||||||||||||||| ||||||||| ||||||||||||| |||| |||||| || |||||||||| |||||    
T  5048060 ttgaatacaattgcactcatataagtatatttataggtgcttgtagatgtttttaaaactagaataatctag 5047989  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 5664848 - 5664877
Alignment:
Q  1 ttgaatacaattgcacccatataagtctat 30  Q
    ||||||||||||||||||||||||||||||    
T  5664848 ttgaatacaattgcacccatataagtctat 5664877  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 5663780 - 5663840
Alignment:
Q  4 aatacaattgcacccatataagtctatttataggtgcctgtaaatgtttctagaactagaa 64  Q
    |||||||| |||||||||||| |||||||||| |||  || | ||||||||| ||||||||    
T  5663780 aatacaatcgcacccatataattctatttataagtgattgaagatgtttctaaaactagaa 5663840  T

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Target: scaffold0406 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 6350 - 6279
Alignment:
Q  1 ttgaatacaattgcacccatataagtctatttataggtgcctgtaaatgtttctagaactagaatattctag 72  Q
    |||||||||||| ||||||||||||||||||||||||||| || |  ||||||||||||||||||| |||||    
T  6350 ttgaatacaatttcacccatataagtctatttataggtgcttgaagctgtttctagaactagaataatctag 6279  T

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Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 22622403 - 22622474
Alignment:
Q  1 ttgaatacaattgcacccatataagtctatttataggtgcctgtaaatgtttctagaactagaatattctag 72  Q
    ||||||||||||||||||||||||| ||||||||| ||||||| | |||||||||||| ||||||| |||||    
T  22622403 ttgaatacaattgcacccatataagcctatttataagtgcctgaagatgtttctagaattagaataatctag 22622474  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 172 - 210
Target Start/End: Complemental strand, 19937891 - 19937853
Alignment:
Q  172 gatcaaataacaactagcatacaatgtttaccaagttct 210  Q
    |||||||||||||||||||||||||||||||||||||||    
T  19937891 gatcaaataacaactagcatacaatgtttaccaagttct 19937853  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 172 - 210
Target Start/End: Complemental strand, 19969030 - 19968992
Alignment:
Q  172 gatcaaataacaactagcatacaatgtttaccaagttct 210  Q
    |||||||||||||||||||||||||||||||||||||||    
T  19969030 gatcaaataacaactagcatacaatgtttaccaagttct 19968992  T

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Target: chr3 (Bit Score: 45; Significance: 8e-17; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 12738261 - 12738201
Alignment:
Q  1 ttgaatacaattgcacccatataagtctatttataggtgcctgtaaatgtttctagaacta 61  Q
    ||||||||||||||||||| |||||| ||||||||||||| |||| |||||||||||||||    
T  12738261 ttgaatacaattgcacccaaataagtttatttataggtgcttgtagatgtttctagaacta 12738201  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 12739412 - 12739341
Alignment:
Q  1 ttgaatacaattgcacccatataagtctatttataggtgcctgtaaatgtttctagaactagaatattctag 72  Q
    ||||||||||||||| ||| |||| ||||||||||| ||| |||| ||||||||||||||| |||| |||||    
T  12739412 ttgaatacaattgcatccaaataattctatttatagatgcttgtagatgtttctagaactaaaataatctag 12739341  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 27 - 72
Target Start/End: Complemental strand, 15023103 - 15023058
Alignment:
Q  27 ctatttataggtgcctgtaaatgtttctagaactagaatattctag 72  Q
    |||||||||||||| |||| ||||||||||||||| |||| |||||    
T  15023103 ctatttataggtgcttgtagatgtttctagaactaaaataatctag 15023058  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 20978869 - 20978940
Alignment:
Q  1 ttgaatacaattgcacccatataagtctatttataggtgc-ctgtaaatgtttctagaactagaatattcta 71  Q
    ||||||| ||| |||||||||||||| ||||||||||| |  |||| |||||||||||||||||||| ||||    
T  20978869 ttgaatataatggcacccatataagtttatttataggtactttgtagatgtttctagaactagaataatcta 20978940  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 1275229 - 1275291
Alignment:
Q  1 ttgaatacaattgcacccatataagtctatttataggtgcctgtaaatgtttctagaactaga 63  Q
    |||||||||||||||||||||||  | || |||||||||| || |  ||||||||||||||||    
T  1275229 ttgaatacaattgcacccatatacctatacttataggtgcttgaaggtgtttctagaactaga 1275291  T

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