View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11516_low_7 (Length: 546)
Name: NF11516_low_7
Description: NF11516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11516_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 16 - 533
Target Start/End: Original strand, 41701561 - 41702083
Alignment:
| Q |
16 |
gatacaatgtcaacaataaagtgtcgctaattcgagtcaatagtcctccaatagaggggaacatgtggggaaaaaagttagcaagtggtgtatattcatc |
115 |
Q |
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| T |
41701561 |
gatacaatgtcaacaataaagtgtcgctaattcgagtcaatagtcctccaatagaggggaacatgtggggaaaaaagttagcaagtggtgtatattcatg |
41701660 |
T |
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| Q |
116 |
atttattggtttgannnnnnnnnnnnnnnggagaatctagtatatatatgcagatgataagtgatgggtgattgataagtatccatgactttagattaag |
215 |
Q |
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| T |
41701661 |
atttattggtttgatttttttttttt---ggagaatctagtatatatatgcagatgataagtgatgggtgattgataagtatccatgactttagattaag |
41701757 |
T |
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| Q |
216 |
tnnnnnnnnnn--tcaacctttggaggacttttctgtaaaaaatcgcacataatccttcatggattagactaatcataaccatggtggtgctttcctact |
313 |
Q |
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| T |
41701758 |
taaaaaaaaaaaatcaacctttggaggacttttctgtaaaaaatcgcacataatccttcatggattagactaatcataaccatggtggtgctttcctact |
41701857 |
T |
|
| Q |
314 |
ataagaaaatgaaatttccattttaaaaactc------aaacactttccttagttgcaaaaggaagaccactttggaggacaatacaaaccattccaaat |
407 |
Q |
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|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41701858 |
ataagaaaatgaaatttccattttaaaactttgagtgaaaacactttccttagttgcaaaaggaagaccactttggaggacaatacaaaccattccaaat |
41701957 |
T |
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| Q |
408 |
attctaatacttgcatatacttttgaatattatagttcatattatctaaagaagatggcatatgattctaatgtttctttgtcatcgaatcaaaaccagt |
507 |
Q |
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| T |
41701958 |
attctaatacttgcatatacttttgaatattatagttcatattatctaaagaagatggcatatgattctaatgtttctttgtcatcgaatcaaaaccagt |
41702057 |
T |
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| Q |
508 |
tttggaatcactttacttcctttctc |
533 |
Q |
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|||||||||||||||||||||||||| |
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| T |
41702058 |
tttggaatcactttacttcctttctc |
41702083 |
T |
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