View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11516_low_8 (Length: 519)

Name: NF11516_low_8
Description: NF11516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11516_low_8
NF11516_low_8
[»] chr6 (1 HSPs)
chr6 (20-506)||(5951617-5952103)
[»] chr5 (2 HSPs)
chr5 (144-343)||(31952004-31952203)
chr5 (435-506)||(31951754-31951825)
[»] chr3 (4 HSPs)
chr3 (189-347)||(28188292-28188450)
chr3 (148-347)||(18077779-18077978)
chr3 (189-284)||(28153709-28153806)
chr3 (443-503)||(36630179-36630239)
[»] chr4 (1 HSPs)
chr4 (201-339)||(9907865-9908003)
[»] chr7 (4 HSPs)
chr7 (443-497)||(27092402-27092456)
chr7 (443-497)||(27185845-27185899)
chr7 (205-260)||(27092762-27092817)
chr7 (205-260)||(27185484-27185539)
[»] scaffold1163 (2 HSPs)
scaffold1163 (111-176)||(2468-2533)
scaffold1163 (462-498)||(2254-2290)
[»] chr2 (3 HSPs)
chr2 (111-159)||(22397077-22397125)
chr2 (237-278)||(22396983-22397024)
chr2 (462-498)||(22396846-22396882)


Alignment Details
Target: chr6 (Bit Score: 471; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 20 - 506
Target Start/End: Complemental strand, 5952103 - 5951617
Alignment:
Q  20 tagagagtaaccacatgaacataatctctatttcactttcttttgactagttttgtgtttaatcagtaattgataagttttcggattttgcagatacagg 119  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5952103 tagagagtaaccacatgaacataatctctatttcacttttttttgactagttttgtgtttaatcagtaattgataagttttcggattttgcagatacagg 5952004  T
Q  120 aagaaatataagcatgtagacatgcaagcaataaagagttgggttcgccaaatcttacacggtcttgtttatctacatgagcatgatcctccggtaattc 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5952003 aagaaatataagcatgtagacatgcaagcaataaagagttgggttcgccaaatcttacacggtcttgtttatctacatgagcatgatcctccggtaattc 5951904  T
Q  220 atagagacctcaagtgcgataacatatttgtcaatggccatcttggacaagtgaaaattggtgacctaggtctagcagcgattcttcgtggttcgcagcc 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  5951903 atagagacctcaagtgcgataacatatttgtcaatggccatcttggacaagtgaaaattggtgacctgggtctagcagcgattcttcgtggttcgcagcc 5951804  T
Q  320 ggcacacagtgttataggtacttattttgatatccttcggcaactcatattactaggctacatcttctgttgcaagtagtgagccgctctaataattctg 419  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5951803 ggcacacagtgttattggtacttattttgatatccttcggcaactcatattactaggctacatcttctgttgcaagtagtgagccgctctaataattctg 5951704  T
Q  420 cgttaatactttctcttttgtggcaggaactccggagttcatggcaccagagttgtacgaagaagaatacaatgaacttgttgatgt 506  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5951703 tgttaatactttctcttttgtggcaggaactccggagttcatggcaccagagttgtacgaagaagaatacaatgaacttgttgatgt 5951617  T

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Target: chr5 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 144 - 343
Target Start/End: Complemental strand, 31952203 - 31952004
Alignment:
Q  144 caagcaataaagagttgggttcgccaaatcttacacggtcttgtttatctacatgagcatgatcctccggtaattcatagagacctcaagtgcgataaca 243  Q
    |||||||||||||||||||  |||||||| ||||| ||||| |||||| ||||||  |||||||| || ||||| ||||| ||||| || || |||||||    
T  31952203 caagcaataaagagttgggcgcgccaaattttacaaggtctagtttatttacatggccatgatccacctgtaatccatagggacctaaaatgtgataaca 31952104  T
Q  244 tatttgtcaatggccatcttggacaagtgaaaattggtgacctaggtctagcagcgattcttcgtggttcgcagccggcacacagtgttataggtactta 343  Q
    ||||||||||||| ||||||||||||||||||||||||||||| || ||||| || ||||| |  ||||| ||  | || || |||||||||||||||||    
T  31952103 tatttgtcaatggtcatcttggacaagtgaaaattggtgaccttggactagctgcaattctccaaggttctcaatcagctcatagtgttataggtactta 31952004  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 435 - 506
Target Start/End: Complemental strand, 31951825 - 31951754
Alignment:
Q  435 ttttgtggcaggaactccggagttcatggcaccagagttgtacgaagaagaatacaatgaacttgttgatgt 506  Q
    |||||||  |||||| ||||||||||||||||| ||  ||||||| ||||||||||||||||||| ||||||    
T  31951825 ttttgtgttaggaacaccggagttcatggcaccggaaatgtacgaggaagaatacaatgaacttgctgatgt 31951754  T

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Target: chr3 (Bit Score: 83; Significance: 4e-39; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 189 - 347
Target Start/End: Original strand, 28188292 - 28188450
Alignment:
Q  189 tatctacatgagcatgatcctccggtaattcatagagacctcaagtgcgataacatatttgtcaatggccatcttggacaagtgaaaattggtgacctag 288  Q
    ||||||||||| ||||||| ||| ||||||||||| ||||||||||| ||||||||| |||||||||| ||||||||||||   |||||||||||| | |    
T  28188292 tatctacatgaacatgatcatccagtaattcatagggacctcaagtgtgataacatacttgtcaatggacatcttggacaaacaaaaattggtgacttgg 28188391  T
Q  289 gtctagcagcgattcttcgtggttcgcagccggcacacagtgttataggtacttatttt 347  Q
    ||||| ||||||||||||||| |||||| ||  | |||||||||||| |||||||||||    
T  28188392 gtctaacagcgattcttcgtgtttcgcaaccaacgcacagtgttataagtacttatttt 28188450  T

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Target: chr3; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 148 - 347
Target Start/End: Complemental strand, 18077978 - 18077779
Alignment:
Q  148 caataaagagttgggttcgccaaatcttacacggtcttgtttatctacatgagcatgatcctccggtaattcatagagacctcaagtgcgataacatatt 247  Q
    |||||||||||||||  || ||||| ||| | |||||||||||||||||||| |||||||| | ||||||||||||  |||||||  | ||||   ||||    
T  18077978 caataaagagttgggcacgtcaaatgttagagggtcttgtttatctacatgaacatgatccacgggtaattcataggaacctcaaacgtgatatagtatt 18077879  T
Q  248 tgtcaatggccatcttggacaagtgaaaattggtgacctaggtctagcagcgattcttcgtggttcgcagccggcacacagtgttataggtacttatttt 347  Q
    ||||||||| | |||| |||||||||||| || | || || ||||||||| |||||| | ||||||  |||| |||||||||||||||||||||| ||||    
T  18077878 tgtcaatggacgtctttgacaagtgaaaactgtttacttaagtctagcagggattctccatggttcatagccagcacacagtgttataggtacttgtttt 18077779  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 189 - 284
Target Start/End: Original strand, 28153709 - 28153806
Alignment:
Q  189 tatctacatgagcatgatcctccggtaattcatagagacctcaagtgcgata--acatatttgtcaatggccatcttggacaagtgaaaattggtgac 284  Q
    ||||||||||| ||||||| ||| |||| |||||| ||||||||||| ||||  ||||| |||||||||| |||||||||||||  ||||||||||||    
T  28153709 tatctacatgaacatgatcatccagtaactcatagggacctcaagtgtgatataacatacttgtcaatggacatcttggacaagcaaaaattggtgac 28153806  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 443 - 503
Target Start/End: Complemental strand, 36630239 - 36630179
Alignment:
Q  443 caggaactccggagttcatggcaccagagttgtacgaagaagaatacaatgaacttgttga 503  Q
    |||| ||||| || |||||||| |||||| | || || |||||||||||||||||||||||    
T  36630239 caggtactccagaattcatggccccagagctttatgaggaagaatacaatgaacttgttga 36630179  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 201 - 339
Target Start/End: Original strand, 9907865 - 9908003
Alignment:
Q  201 catgatcctccggtaattcatagagacctcaagtgcgataacatatttgtcaatggccatcttggacaagtgaaaattggtgacctaggtctagcagcga 300  Q
    ||||||||||| || || ||||||||||| ||||| |||||||| ||||||||||| ||| | ||  | || || ||||||||  |||| || ||||| |    
T  9907865 catgatcctcctgtgatacatagagacctaaagtgtgataacatctttgtcaatggtcatatgggtaaggtcaagattggtgatttagggcttgcagcaa 9907964  T
Q  301 ttcttcgtggttcgcagccggcacacagtgttataggta 339  Q
    |||||||||| || || |  ||||||||||| |||||||    
T  9907965 ttcttcgtggctcccaacatgcacacagtgtcataggta 9908003  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 443 - 497
Target Start/End: Complemental strand, 27092456 - 27092402
Alignment:
Q  443 caggaactccggagttcatggcaccagagttgtacgaagaagaatacaatgaact 497  Q
    |||| ||||| ||||||||||||||||| |||||||||||  |||||||||||||    
T  27092456 caggtactccagagttcatggcaccagaattgtacgaagagaaatacaatgaact 27092402  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 443 - 497
Target Start/End: Original strand, 27185845 - 27185899
Alignment:
Q  443 caggaactccggagttcatggcaccagagttgtacgaagaagaatacaatgaact 497  Q
    |||| ||||| ||||||||||||||||| |||||||||||  |||||||||||||    
T  27185845 caggtactccagagttcatggcaccagaattgtacgaagagaaatacaatgaact 27185899  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 260
Target Start/End: Complemental strand, 27092817 - 27092762
Alignment:
Q  205 atcctccggtaattcatagagacctcaagtgcgataacatatttgtcaatggccat 260  Q
    ||||||| || || |||||||||||||| || ||||| ||||||||||||||||||    
T  27092817 atcctcctgtgatacatagagacctcaaatgtgataatatatttgtcaatggccat 27092762  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 260
Target Start/End: Original strand, 27185484 - 27185539
Alignment:
Q  205 atcctccggtaattcatagagacctcaagtgcgataacatatttgtcaatggccat 260  Q
    ||||||| || || |||||||||||||| || ||||| ||||||||||||||||||    
T  27185484 atcctcctgtgatacatagagacctcaaatgtgataatatatttgtcaatggccat 27185539  T

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Target: scaffold1163 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: scaffold1163
Description:

Target: scaffold1163; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 111 - 176
Target Start/End: Complemental strand, 2533 - 2468
Alignment:
Q  111 agatacaggaagaaatataagcatgtagacatgcaagcaataaagagttgggttcgccaaatctta 176  Q
    |||||||||||||||||||| ||| ||| |||| |||||||||||| || |  |||||||||||||    
T  2533 agatacaggaagaaatataatcatataggcatgtaagcaataaagaattagcctcgccaaatctta 2468  T

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Target: scaffold1163; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 462 - 498
Target Start/End: Complemental strand, 2290 - 2254
Alignment:
Q  462 ggcaccagagttgtacgaagaagaatacaatgaactt 498  Q
    ||||||||| |||||||||||||||||||||||||||    
T  2290 ggcaccagaattgtacgaagaagaatacaatgaactt 2254  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 111 - 159
Target Start/End: Complemental strand, 22397125 - 22397077
Alignment:
Q  111 agatacaggaagaaatataagcatgtagacatgcaagcaataaagagtt 159  Q
    |||||||||||||||||||| ||| ||| |||| |||||||||||||||    
T  22397125 agatacaggaagaaatataatcatataggcatgtaagcaataaagagtt 22397077  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 278
Target Start/End: Complemental strand, 22397024 - 22396983
Alignment:
Q  237 gataacatatttgtcaatggccatcttggacaagtgaaaatt 278  Q
    ||||||| |||||||||||| ||||||||||| |||||||||    
T  22397024 gataacacatttgtcaatggacatcttggacacgtgaaaatt 22396983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 462 - 498
Target Start/End: Complemental strand, 22396882 - 22396846
Alignment:
Q  462 ggcaccagagttgtacgaagaagaatacaatgaactt 498  Q
    ||||||||| ||||||||||||||||| |||||||||    
T  22396882 ggcaccagaattgtacgaagaagaataaaatgaactt 22396846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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