View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11517_low_1 (Length: 854)
Name: NF11517_low_1
Description: NF11517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11517_low_1 |
 | |
|
| [»] scaffold0197 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0197 (Bit Score: 627; Significance: 0; HSPs: 2)
Name: scaffold0197
Description:
Target: scaffold0197; HSP #1
Raw Score: 627; E-Value: 0
Query Start/End: Original strand, 60 - 836
Target Start/End: Original strand, 30353 - 31133
Alignment:
| Q |
60 |
taaatgaatgaggtgaggacaagtgaagtagttaacagtatcatgaaagttta-----cgatattgcgcttgagtcttattgaaaagaatcatatgcaaa |
154 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | ||| | |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30353 |
taaatgaatgaggtgaggacaagtgaagtagttaacagtatcattcattcttatcaccccatattgcgcttgagtcttattgaaaagaatcatatgcaaa |
30452 |
T |
|
| Q |
155 |
tgtcgtaatgcaattccgagatatctatnnnnnnnnnnnnnnnnn-ttagagataccttattggttggtttcacatgccacggatcccgatcctatcacc |
253 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30453 |
tgtcgtaatgcaattccgagatatctataaaaaaaaaaaaaaaaaattagagataccttattggttggtttcacatgccacggatcccgatcctatcacc |
30552 |
T |
|
| Q |
254 |
cttcctgcaaagacgcacaaccgttgataactattcccatcaacggtcaccatctccccctttcaccttctcaaattttcccaattcccgcannnnnnnc |
353 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
30553 |
cttcctgcaaagacgcacaaccgttgataactatttccatcaacggtcaccatctccccctttcaccttctcaaattttcccaattcccgcatttttttc |
30652 |
T |
|
| Q |
354 |
ttcaatcttctccgccctataaaacacccaaaacacttcttccaccatccatcatcccaataacatctcaaaatattttctttctcttcaatttcttttc |
453 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
30653 |
ttcaatcttctccgccctataaaacacccaaaacacttcttccaccatccatcatcccaataacatctcaaa-tattttctttctcttcaatttcttttc |
30751 |
T |
|
| Q |
454 |
aatcaaaatggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccactaaagccgcacggaaatcagctccg |
553 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
30752 |
aatcaaaatggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccaccaaagccgcacggaaatcagctccg |
30851 |
T |
|
| Q |
554 |
gcgaccggaggagtgaagaagccacaccgtttccgtcccggaaccgtggcgcttcgtgaaatccgcaagtaccagaagagcactgagcttctgataagaa |
653 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30852 |
gcgaccggaggagtgaagaagccacaccgtttccgtcccggaaccgtggcgcttcgtgaaatccgcaagtaccagaagagcactgagcttctgataagaa |
30951 |
T |
|
| Q |
654 |
aacttccattccaacgtcttgttcgtgaaatcgctcaggatttcaaaaccgatctcagattccagagcagtgctgtttctgctcttcaagaagctgctga |
753 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30952 |
aactt-cattccaacgtcttgttcgtgaaatcgctcaggatttcaaaacctatctcagattccagagcagtgctgtttctgctcttcaagaagctgctga |
31050 |
T |
|
| Q |
754 |
agcttatcttgttggtttgtttgaagatacgaatctttgcgctattcatgctaagagagttactattatgcctaaggatattc |
836 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31051 |
agcttatcttgttggtttgtttgaagatacaaatctttgcgctattcatgctaagagagttactattatgcctaaggatattc |
31133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0197; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 15 - 62
Target Start/End: Original strand, 28316 - 28363
Alignment:
| Q |
15 |
agcagagacaaacctagggatgtcaaagtgaatggaaaagataagtaa |
62 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28316 |
agcagagacaaacctagggatgtcaaagtgaatggaaaagataagtaa |
28363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 564; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 212 - 836
Target Start/End: Original strand, 21317073 - 21317696
Alignment:
| Q |
212 |
tattggttggtttcacatgccacggatcccgatcctatcacccttcctgcaaagacgcacaaccgttgataactattcccatcaacggtcaccatctccc |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21317073 |
tattggttggtttcacatgccacggatcccgatcctatcacccttcctgcaaagacgcacaaccgttgataactattcccatcaacggtcaccatctccc |
21317172 |
T |
|
| Q |
312 |
cctttcaccttctcaaattttcccaattcccgcannnnnnncttcaatcttctccgccctataaaacacccaaaacacttcttccaccatccatcatccc |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
21317173 |
cctttcaccttctcaaattttcccaattcccgcatttttttcttcaatcttctccgccctataaaacacccaaaacacttcttccaacatccatcatccc |
21317272 |
T |
|
| Q |
412 |
aataacatctcaaaatattttctttctcttcaatttcttttcaatcaaaatggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagcccca |
511 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21317273 |
aataacatctcaaa-tattttctttctctcagttttcttttcaatcaaaatggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagcccca |
21317371 |
T |
|
| Q |
512 |
cgcaaacaactcgccactaaagccgcacggaaatcagctccggcgaccggaggagtgaagaagccacaccgtttccgtcccggaaccgtggcgcttcgtg |
611 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21317372 |
cgcaaacaactcgccaccaaagccgcacggaaatcagctccggcgaccggaggagtgaagaagccacaccgtttccgtcccggaaccgtggcgcttcgtg |
21317471 |
T |
|
| Q |
612 |
aaatccgcaagtaccagaagagcactgagcttctgataagaaaacttccattccaacgtcttgttcgtgaaatcgctcaggatttcaaaaccgatctcag |
711 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21317472 |
aaatccgcaagtaccagaagagcactgagcttctgataagaaaacttccattccaacgtcttgttcgtgaaatcgctcaggatttcaaaaccgatctcag |
21317571 |
T |
|
| Q |
712 |
attccagagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaagatacgaatctttgcgctattcatgctaagaga |
811 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
21317572 |
attccagagcagtgctgtttctgctcttcaagaagcggctgaagcttatcttgttggtttgtttgaagatacaaatctttgcgctattcatgctaagaga |
21317671 |
T |
|
| Q |
812 |
gttactattatgcctaaggatattc |
836 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
21317672 |
gttactattatgcctaaggatattc |
21317696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 460 - 836
Target Start/End: Complemental strand, 3930343 - 3929967
Alignment:
| Q |
460 |
aatggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccactaaagccgcacggaaatcagctccggcgacc |
559 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||| ||||||||| | |||||||| ||||| ||| |
|
|
| T |
3930343 |
aatggcacgtaccaaacaaacagcacgaaaatccaccggaggaaaagccccacggaaacaactcgccaccaaagccgcaagaaaatcagcaccggcaacc |
3930244 |
T |
|
| Q |
560 |
ggaggagtgaagaagccacaccgtttccgtcccggaaccgtggcgcttcgtgaaatccgcaagtaccagaagagcactgagcttctgataagaaaacttc |
659 |
Q |
| |
|
|| || || ||||| |||||| | |||||||| ||||| || || |||||||| ||||||||||| |||||||||||||| ||||| || || ||||||| |
|
|
| T |
3930243 |
ggtggtgtaaagaaaccacacagattccgtccaggaacagtcgcacttcgtgagatccgcaagtatcagaagagcactgaacttctcattaggaaacttc |
3930144 |
T |
|
| Q |
660 |
cattccaacgtcttgttcgtgaaatcgctcaggatttcaaaaccgatctcagattccagagcagtgctgtttctgctcttcaagaagctgctgaagctta |
759 |
Q |
| |
|
|||||||| | | ||||||||||||||||||||||||||||| ||||| |||| ||||| ||||||||||||||||||||||||||||||||||| || |
|
|
| T |
3930143 |
cattccaaagattggttcgtgaaatcgctcaggatttcaaaactgatcttcgatttcagagtagtgctgtttctgctcttcaagaagctgctgaagcgta |
3930044 |
T |
|
| Q |
760 |
tcttgttggtttgtttgaagatacgaatctttgcgctattcatgctaagagagttactattatgcctaaggatattc |
836 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
3930043 |
tcttgttggtttgtttgaagatacgaatctttgtgccattcatgctaagagagttactattatgccgaaggatattc |
3929967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 15 - 182
Target Start/End: Original strand, 21316816 - 21316983
Alignment:
| Q |
15 |
agcagagacaaacctagggatgtcaaagtgaatggaaaagataagtaaatgaatgaggtgaggacaagtgaagtagttaacagtatcatgaaagtttacg |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |
|
|
| T |
21316816 |
agcagagacaaacctagggatgtcaaagtgaatggaacagataagtaaatgaatgaggtgaggacaagtgaattagttaacagtatcatgaaagtttatg |
21316915 |
T |
|
| Q |
115 |
atattgcgcttgagtcttattgaaaagaatcatatgcaaatgtcgtaatgcaattccgagatatctat |
182 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
21316916 |
atattgcgctcgagtcttattgaaaagaatcatatacaaatgtcgtaatgcaattccgagatatctat |
21316983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 542 - 835
Target Start/End: Complemental strand, 3928909 - 3928616
Alignment:
| Q |
542 |
aaatcagctccggcgaccggaggagtgaagaagccacaccgtttccgtcccggaaccgtggcgcttcgtgaaatccgcaagtaccagaagagcactgagc |
641 |
Q |
| |
|
|||||||| | |||||| |||||| |||||||||||||| | ||| | || ||||| || || | ||||||||| | ||||| || |||| |||||||| |
|
|
| T |
3928909 |
aaatcagcactggcgacaggaggaatgaagaagccacacagattcagaccaggaacagtcgcattgcgtgaaatcaggaagtatcaaaagatcactgagc |
3928810 |
T |
|
| Q |
642 |
ttctgataagaaaacttccattccaacgtcttgttcgtgaaatcgctcaggatttcaaaaccgatctcagattccagagcagtgctgtttctgctcttca |
741 |
Q |
| |
|
|||| || || |||||||| ||| || | | |||| |||||||||||||||||||||||| |||||| ||||||||| ||| ||||||||||||||||| |
|
|
| T |
3928809 |
ttctcattaggaaacttcctttcaaaagattggttcatgaaatcgctcaggatttcaaaactgatctccgattccagatcagcgctgtttctgctcttca |
3928710 |
T |
|
| Q |
742 |
agaagctgctgaagcttatcttgttggtttgtttgaagatacgaatctttgcgctattcatgctaagagagttactattatgcctaaggatatt |
835 |
Q |
| |
|
|||| |||||||| | | ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
3928709 |
agaaatcgctgaagcgtgtattgttggtttgtttgaagatatgaatctttgtgctattcatgctaagagagttactattgtgcctaaggatatt |
3928616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 15 - 143
Target Start/End: Original strand, 21314031 - 21314159
Alignment:
| Q |
15 |
agcagagacaaacctagggatgtcaaagtgaatggaaaagataagtaaatgaatgaggtgaggacaagtgaagtagttaacagtatcatgaaagtttacg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
21314031 |
agcagagacaaacctagggatgtcaaagtgaatggaaaagataagtaaatgaatgaggtgaggacaagtgaagtagttaacagtatcatgaaagtttatg |
21314130 |
T |
|
| Q |
115 |
atattgcgcttgagtcttattgaaaagaa |
143 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
21314131 |
atattgcgcttgagtcttattgaaaagaa |
21314159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 265; Significance: 1e-147; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 456 - 836
Target Start/End: Original strand, 13576090 - 13576470
Alignment:
| Q |
456 |
tcaaaatggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccactaaagccgcacggaaatcagctccggc |
555 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||| |||||||| |
|
|
| T |
13576090 |
tcaaaatggcacgtaccaaacaaacagcccgcaaatccaccggcggaaaagcaccacgcaaacaactcgccacaaaagccgctcggaaatccgctccggc |
13576189 |
T |
|
| Q |
556 |
gaccggaggagtgaagaagccacaccgtttccgtcccggaaccgtggcgcttcgtgaaatccgcaagtaccagaagagcactgagcttctgataagaaaa |
655 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |||||||| || |||||||||||||||||||| ||||||||||| |||||||| ||||| || |
|
|
| T |
13576190 |
caccggaggagtgaagaagccacatcgtttccgtcctggaaccgtcgctcttcgtgaaatccgcaagtatcagaagagcaccgagcttctcataaggaag |
13576289 |
T |
|
| Q |
656 |
cttccattccaacgtcttgttcgtgaaatcgctcaggatttcaaaaccgatctcagattccagagcagtgctgtttctgctcttcaagaagctgctgaag |
755 |
Q |
| |
|
|||||||||||| | | ||||| ||||| ||||||||||||||||| |||||| | || || ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13576290 |
cttccattccaaagattggttcgagaaattgctcaggatttcaaaacggatctccgttttcaaagcagtgctgtttctgctcttcaagaagctgctgaag |
13576389 |
T |
|
| Q |
756 |
cttatcttgttggtttgtttgaagatacgaatctttgcgctattcatgctaagagagttactattatgcctaaggatattc |
836 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
13576390 |
cttatcttgttggtttgtttgaggatacgaatctttgtgctattcatgctaagagggttactattatgcctaaggatattc |
13576470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 569 - 836
Target Start/End: Complemental strand, 34571719 - 34571452
Alignment:
| Q |
569 |
aagaagccacaccgtttccgtcccggaaccgtggcgcttcgtgaaatccgcaagtaccagaagagcactgagcttctgataagaaaacttccattccaac |
668 |
Q |
| |
|
|||||||| || ||||| ||| |||||| || || |||||||| || || ||||| |||||||| || || ||| |||| | |||||||||||||| | |
|
|
| T |
34571719 |
aagaagcctcatcgttttcgttgcggaacagttgctcttcgtgagatacgtaagtatcagaagagtaccgaacttttgatccgtaaacttccattccagc |
34571620 |
T |
|
| Q |
669 |
gtcttgttcgtgaaatcgctcaggatttcaaaaccgatctcagattccagagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttgg |
768 |
Q |
| |
|
|||||||||||||||| |||||||||||||| || ||| | ||||||||||| ||| ||| || ||||| ||||| || ||||| ||| | ||||| |
|
|
| T |
34571619 |
gtcttgttcgtgaaattgctcaggatttcaagacggatttacgattccagagccatgcggttctcgcacttcaggaagcagcggaagcatatttggttgg |
34571520 |
T |
|
| Q |
769 |
tttgtttgaagatacgaatctttgcgctattcatgctaagagagttactattatgcctaaggatattc |
836 |
Q |
| |
|
||||||||| ||||| ||| | || || |||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
34571519 |
tttgtttgaggataccaatttgtgtgcaattcatgctaagagggttaccattatgcctaaggatattc |
34571452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 569 - 810
Target Start/End: Complemental strand, 34579187 - 34578946
Alignment:
| Q |
569 |
aagaagccacaccgtttccgtcccggaaccgtggcgcttcgtgaaatccgcaagtaccagaagagcactgagcttctgataagaaaacttccattccaac |
668 |
Q |
| |
|
|||||||| || |||| ||||| ||||| || || |||||||| || || ||||| |||||| | || || ||| |||| | |||||||||||||| | |
|
|
| T |
34579187 |
aagaagcctcatcgttatcgtcctggaacagttgctcttcgtgagatacgtaagtatcagaagggtaccgaacttttgattcgtaaacttccattccagc |
34579088 |
T |
|
| Q |
669 |
gtcttgttcgtgaaatcgctcaggatttcaaaaccgatctcagattccagagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttgg |
768 |
Q |
| |
|
|||||||||||||||| |||||| ||||||| || ||| | |||||||||||| ||| ||| || ||||| ||||| | ||||||||| | ||||| |
|
|
| T |
34579087 |
gtcttgttcgtgaaattgctcagaatttcaagacagatttgagattccagagccatgcagttctcgcacttcaggaagcagtggaagcttatttggttgg |
34578988 |
T |
|
| Q |
769 |
tttgtttgaagatacgaatctttgcgctattcatgctaagag |
810 |
Q |
| |
|
||||||||| ||||| ||| | || || |||||||||||||| |
|
|
| T |
34578987 |
tttgtttgaggataccaatttgtgtgcaattcatgctaagag |
34578946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 569 - 810
Target Start/End: Complemental strand, 34584936 - 34584695
Alignment:
| Q |
569 |
aagaagccacaccgtttccgtcccggaaccgtggcgcttcgtgaaatccgcaagtaccagaagagcactgagcttctgataagaaaacttccattccaac |
668 |
Q |
| |
|
|||||||| || |||| ||||| ||||| || || |||||||| || || ||||| |||||| | || || ||| |||| | |||||||||||||| | |
|
|
| T |
34584936 |
aagaagcctcatcgttatcgtcctggaacagttgctcttcgtgagatacgtaagtatcagaagggtaccgaacttttgattcgtaaacttccattccagc |
34584837 |
T |
|
| Q |
669 |
gtcttgttcgtgaaatcgctcaggatttcaaaaccgatctcagattccagagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttgg |
768 |
Q |
| |
|
|||||||||||||||| |||||| ||||||| || ||| | |||||||||||| ||| ||| || ||||| ||||| | ||||||||| | ||||| |
|
|
| T |
34584836 |
gtcttgttcgtgaaattgctcagaatttcaagacagatttgagattccagagccatgcagttctcgcacttcaggaagcagtggaagcttatttggttgg |
34584737 |
T |
|
| Q |
769 |
tttgtttgaagatacgaatctttgcgctattcatgctaagag |
810 |
Q |
| |
|
||||||||| ||||| ||| | || || |||||||||||||| |
|
|
| T |
34584736 |
tttgtttgaggataccaatttgtgtgcaattcatgctaagag |
34584695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 656 - 836
Target Start/End: Complemental strand, 34562841 - 34562658
Alignment:
| Q |
656 |
cttccattccaacgtcttgttcgtgaaatcgctcagg---atttcaaaaccgatctcagattccagagcagtgctgtttctgctcttcaagaagctgctg |
752 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||| | || |||| | ||| ||||||||||||| ||| ||| || ||||| ||||| || | |
|
|
| T |
34562841 |
cttccattccagcgtcttgttcgtgaaattgctcatgttgatctcaagccggatttcagattccagagtcatgcggttctcgcacttcaggaagcagcgg |
34562742 |
T |
|
| Q |
753 |
aagcttatcttgttggtttgtttgaagatacgaatctttgcgctattcatgctaagagagttactattatgcctaaggatattc |
836 |
Q |
| |
|
|||| ||| | |||||||||||||| ||||| ||| | || || |||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
34562741 |
aagcatatttggttggtttgtttgaggataccaatttgtgtgcaattcatgctaagagggttaccattatgcctaaggatattc |
34562658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 461 - 836
Target Start/End: Original strand, 12531239 - 12531614
Alignment:
| Q |
461 |
atggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccactaaagccgcacggaaatcagctccggcgaccg |
560 |
Q |
| |
|
||||| |||||||| |||||||| ||||||||||||||||||||||| ||| | || || || ||||||||||| || |||||||| |||||||| |||| |
|
|
| T |
12531239 |
atggctcgtaccaagcaaacagctcgcaaatccaccggcggaaaagcaccaaggaagcagcttgccactaaagctgcccggaaatctgctccggcaaccg |
12531338 |
T |
|
| Q |
561 |
gaggagtgaagaagccacaccgtttccgtcccggaaccgtggcgcttcgtgaaatccgcaagtaccagaagagcactgagcttctgataagaaaacttcc |
660 |
Q |
| |
|
||||||| |||||||||||| | |||||||| ||||| || || |||||||| ||||||||||||||||||||||| |||||||| ||||| || ||||| |
|
|
| T |
12531339 |
gaggagtcaagaagccacacagattccgtccaggaactgttgcacttcgtgagatccgcaagtaccagaagagcaccgagcttcttataaggaagcttcc |
12531438 |
T |
|
| Q |
661 |
attccaacgtcttgttcgtgaaatcgctcaggatttcaaaaccgatctcagattccagagcagtgctgtttctgctcttcaagaagctgctgaagcttat |
760 |
Q |
| |
|
|||||| | |||||||||||||||||||| ||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12531439 |
attccagaggcttgttcgtgaaatcgctcaagatttcaaaacagatctccgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttat |
12531538 |
T |
|
| Q |
761 |
cttgttggtttgtttgaagatacgaatctttgcgctattcatgctaagagagttactattatgcctaaggatattc |
836 |
Q |
| |
|
||||||||||||||||||||||| ||||| || || |||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
12531539 |
cttgttggtttgtttgaagatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattc |
12531614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 461 - 836
Target Start/End: Complemental strand, 12547380 - 12547005
Alignment:
| Q |
461 |
atggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccactaaagccgcacggaaatcagctccggcgaccg |
560 |
Q |
| |
|
||||| |||||||| |||||||| ||||||||||||||||||||||| ||| | || || || ||||||||||| || |||||||| |||||||| |||| |
|
|
| T |
12547380 |
atggctcgtaccaagcaaacagctcgcaaatccaccggcggaaaagcaccaaggaagcagcttgccactaaagctgcccggaaatctgctccggcaaccg |
12547281 |
T |
|
| Q |
561 |
gaggagtgaagaagccacaccgtttccgtcccggaaccgtggcgcttcgtgaaatccgcaagtaccagaagagcactgagcttctgataagaaaacttcc |
660 |
Q |
| |
|
||||||| |||||||||||| | |||||||| ||||| || || |||||||| ||||||||||||||||||||||| |||||||| ||||| || ||||| |
|
|
| T |
12547280 |
gaggagtcaagaagccacacagattccgtccaggaactgttgcacttcgtgagatccgcaagtaccagaagagcaccgagcttcttataaggaagcttcc |
12547181 |
T |
|
| Q |
661 |
attccaacgtcttgttcgtgaaatcgctcaggatttcaaaaccgatctcagattccagagcagtgctgtttctgctcttcaagaagctgctgaagcttat |
760 |
Q |
| |
|
|||||| | |||||||||||||||||||| ||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12547180 |
attccagaggcttgttcgtgaaatcgctcaagatttcaaaacagatctccgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttat |
12547081 |
T |
|
| Q |
761 |
cttgttggtttgtttgaagatacgaatctttgcgctattcatgctaagagagttactattatgcctaaggatattc |
836 |
Q |
| |
|
||||||||||||||||||||||| ||||| || || |||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
12547080 |
cttgttggtttgtttgaagatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattc |
12547005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 462 - 831
Target Start/End: Complemental strand, 9867038 - 9866668
Alignment:
| Q |
462 |
tggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccactaaagccgcacggaaatcagctccggcgaccgg |
561 |
Q |
| |
|
||||| ||||||||||||| || ||||||||||||||||| ||||| ||| | || | || ||||| ||||| || ||||||||||||||||| || || |
|
|
| T |
9867038 |
tggcatgtaccaaacaaacggctcgcaaatccaccggcggtaaagcaccatgaaagaagctggccacaaaagctgctcggaaatcagctccggcaacggg |
9866939 |
T |
|
| Q |
562 |
aggagtgaagaagccacaccgtttccgtcccggaaccgtggcgcttcgtgaaatccgca--agtaccagaagagcactgagcttctgataagaaaacttc |
659 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||| | ||||||| ||||||| ||||||||| |||| || |||| |
|
|
| T |
9866938 |
aggagtgaagaagccacaccgtttccgtcctggaaccgttgcgcttcgtgagatccgtaagagtaccaaaagagcattgagcttct--taaggaagcttc |
9866841 |
T |
|
| Q |
660 |
cattccaacgtct--tgttcgtgaaatcgctcaggatttcaaaaccgatctcagattccagagcagtgctgtttctgctcttcaagaagctgctgaagct |
757 |
Q |
| |
|
| || || | || | | | |||| ||| |||||||||| || ||||| || ||| |||| |||| ||||||||||||||||||||||||| ||| |
|
|
| T |
9866840 |
cgtttcagagactgatctgagggaaa-cgcgaaggatttcaagactgatctgaggttctagagtagtgatgtttctgctcttcaagaagctgctaaagac |
9866742 |
T |
|
| Q |
758 |
tatcttgttggtttgtttgaagatacgaatctttgcgctattcatgctaagagagttactattatgcctaagga |
831 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
9866741 |
tatcttgttggtttgtttgaagatactaacctttgtgctattcatgctaagagagttactattatgcctgagga |
9866668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 452 - 823
Target Start/End: Original strand, 9894390 - 9894752
Alignment:
| Q |
452 |
tcaatcaaaatggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccactaaagccgcacggaaatcagctc |
551 |
Q |
| |
|
||||||| |||||| ||||||| |||||||||||||| || ||||| ||||| ||||| || || || ||||| |||||||| || |||||||||| |
|
|
| T |
9894390 |
tcaatcaccatggcaggtaccaagcaaacagcacgcaat---actggcggcaaagcaccacgaaagcagcttgccaccaaagccgctcgaaaatcagctc |
9894486 |
T |
|
| Q |
552 |
cggcgaccggaggagtgaagaagccacaccgtttccgtcccggaaccgtggcgcttcgtgaaatccgcaagtaccagaagagcactgagcttctgataag |
651 |
Q |
| |
|
||| ||||| ||||||||||||||||| ||| ||| ||||| || || |||||||| ||||| || ||||||| ||||||| ||| ||||| |
|
|
| T |
9894487 |
tggcagccggaacagtgaagaagccacaccatttttgtcatggaacggttgctcttcgtgagatccgtaattaccagaggagcact-----tctaataag |
9894581 |
T |
|
| Q |
652 |
aaaacttccattccaacgtcttgttcgtgaaatcgctcaggatttcaaaaccgatctcagattccagagcagtgctgtttctgctcttcaagaagctgct |
751 |
Q |
| |
|
|| ||||| || || | ||||| | ||||| |||||||||| ||| || | ||| || |||||||| ||||||||||||||| ||||||||| || | |
|
|
| T |
9894582 |
gaagcttccgtttcagagacttgtgagggaaattgctcaggatt-caagactggtctgaggttccagagtagtgctgtttctgctgttcaagaagttgtt |
9894680 |
T |
|
| Q |
752 |
gaagcttatcttgttggtttgtttgaagatacgaatctttgcgctattcatgctaagagagttactattatg |
823 |
Q |
| |
|
||||||| | ||||| |||||||||||||||| ||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
9894681 |
gaagcttgttttgttagtttgtttgaagatactaatatttgcgctattcatgctaagtgagttactattatg |
9894752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 727 - 835
Target Start/End: Original strand, 9869994 - 9870102
Alignment:
| Q |
727 |
tgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaagatacgaatctttgcgctattcatgctaagagagttactattatgcct |
826 |
Q |
| |
|
||||| || |||||||||||||| |||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9869994 |
tgtttatggtcttcaagaagctgttgaagcttattttgttggtttgttttaagatattaatctttgcgctattcatgctaagagagttactattatgcct |
9870093 |
T |
|
| Q |
827 |
aaggatatt |
835 |
Q |
| |
|
||||||||| |
|
|
| T |
9870094 |
aaggatatt |
9870102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 698 - 822
Target Start/End: Original strand, 38735501 - 38735625
Alignment:
| Q |
698 |
aaaaccgatctcagattccagagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaagatacgaatctttgcgcta |
797 |
Q |
| |
|
||||| |||||||| ||||| |||| |||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||| || ||||| ||| |
|
|
| T |
38735501 |
aaaacagatctcaggttccatagcaacgctgtttctgctcttcaaaaagtcattgaagtttatcttgttggtttgtttgaagatactaacctttgtacta |
38735600 |
T |
|
| Q |
798 |
ttcatgctaagagagttactattat |
822 |
Q |
| |
|
||||||||||||| ||||| ||||| |
|
|
| T |
38735601 |
ttcatgctaagagggttacaattat |
38735625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 542 - 660
Target Start/End: Original strand, 9869843 - 9869961
Alignment:
| Q |
542 |
aaatcagctccggcgaccggaggagtgaagaagccacaccgtttccgtcccggaaccgtggcgcttcgtgaaatccgcaagtaccagaagagcactgagc |
641 |
Q |
| |
|
|||||||||| ||| ||||| | ||||||||| |||||| ||||| ||| |||||||| || |||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
9869843 |
aaatcagctctggcaaccggggcagtgaagaaaccacactgtttctgtcatggaaccgttgctcttcgtgagatccgtaagtaccagaagagcactgagc |
9869942 |
T |
|
| Q |
642 |
ttctgataagaaaacttcc |
660 |
Q |
| |
|
|||| ||||| || ||||| |
|
|
| T |
9869943 |
ttctaataaggaagcttcc |
9869961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 794 - 828
Target Start/End: Original strand, 12538678 - 12538712
Alignment:
| Q |
794 |
gctattcatgctaagagagttactattatgcctaa |
828 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |
|
|
| T |
12538678 |
gctattcatgctaagagagttactatcatgcctaa |
12538712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 218; Significance: 1e-119; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 459 - 836
Target Start/End: Complemental strand, 43480057 - 43479680
Alignment:
| Q |
459 |
aaatggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccactaaagccgcacggaaatcagctccggcgac |
558 |
Q |
| |
|
||||||| |||||||||||||| || |||||||||||||| || ||||| ||| | |||||||||||||| |||||||| ||||||||||||||||| || |
|
|
| T |
43480057 |
aaatggctcgtaccaaacaaaccgctcgcaaatccaccggtggcaaagctccaaggaaacaactcgccaccaaagccgctcggaaatcagctccggccac |
43479958 |
T |
|
| Q |
559 |
cggaggagtgaagaagccacaccgtttccgtcccggaaccgtggcgcttcgtgaaatccgcaagtaccagaagagcactgagcttctgataagaaaactt |
658 |
Q |
| |
|
|||||||||||||||||||||| | |||||||| ||||| || || |||||||| ||||||||||| |||||||| || |||||||| || || || ||| |
|
|
| T |
43479957 |
cggaggagtgaagaagccacacagattccgtcctggaactgttgctcttcgtgagatccgcaagtatcagaagagtaccgagcttctcatcaggaagctt |
43479858 |
T |
|
| Q |
659 |
ccattccaacgtcttgttcgtgaaatcgctcaggatttcaaaaccgatctcagattccagagcagtgctgtttctgctcttcaagaagctgctgaagctt |
758 |
Q |
| |
|
||||||||| | | ||| | ||||||||||||||||||||||| |||||||| |||||||| || ||||||||||||||||||||||| |||||||||| |
|
|
| T |
43479857 |
ccattccaaagattggttagggaaatcgctcaggatttcaaaactgatctcaggttccagagtagcgctgtttctgctcttcaagaagccgctgaagctt |
43479758 |
T |
|
| Q |
759 |
atcttgttggtttgtttgaagatacgaatctttgcgctattcatgctaagagagttactattatgcctaaggatattc |
836 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
43479757 |
atcttgttggtttgtttgaagatactaacctttgcgctattcatgctaagagggttacaattatgcctaaggatattc |
43479680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 461 - 836
Target Start/End: Original strand, 38799242 - 38799617
Alignment:
| Q |
461 |
atggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccactaaagccgcacggaaatcagctccggcgaccg |
560 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||||| || || || || || || |||||||| || ||||| |||||||||||||||||||||| |
|
|
| T |
38799242 |
atggcacgtaccaagcaaacagctcgcaaatccaccggcggcaaggctccccggaagcagctcgccaccaaggccgctcggaaatcagctccggcgaccg |
38799341 |
T |
|
| Q |
561 |
gaggagtgaagaagccacaccgtttccgtcccggaaccgtggcgcttcgtgaaatccgcaagtaccagaagagcactgagcttctgataagaaaacttcc |
660 |
Q |
| |
|
||||||||||||||||||| | ||| | || ||||| || || | | || ||||| ||||| |||||||||||||||||||| || | |||||||| |
|
|
| T |
38799342 |
gaggagtgaagaagccacatagattcagacctggaactgttgctttgagagagatccgtaagtatcagaagagcactgagcttctcatccgtaaacttcc |
38799441 |
T |
|
| Q |
661 |
attccaacgtcttgttcgtgaaatcgctcaggatttcaaaaccgatctcagattccagagcagtgctgtttctgctcttcaagaagctgctgaagcttat |
760 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||||| || ||||| |||||||||||||| || ||||| |||||||||||||||||||||||||| |
|
|
| T |
38799442 |
attccaacgtcttgttcgtgaaattgctcaagatttcaagacagatctgagattccagagcagcgcagtttccgctcttcaagaagctgctgaagcttac |
38799541 |
T |
|
| Q |
761 |
cttgttggtttgtttgaagatacgaatctttgcgctattcatgctaagagagttactattatgcctaaggatattc |
836 |
Q |
| |
|
| |||||| | |||||||| || || ||||| || |||||||||||||||||||| || ||||||||||| |||| |
|
|
| T |
38799542 |
ttggttggtctctttgaagacacaaacctttgtgcaattcatgctaagagagttacaatcatgcctaaggacattc |
38799617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 461 - 836
Target Start/End: Complemental strand, 38822275 - 38821900
Alignment:
| Q |
461 |
atggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccactaaagccgcacggaaatcagctccggcgaccg |
560 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||||| || || || || || || |||||||| || ||||| |||||||||||||||||||||| |
|
|
| T |
38822275 |
atggcacgtaccaagcaaacagctcgcaaatccaccggcggcaaggctccccggaagcagctcgccaccaaggccgctcggaaatcagctccggcgaccg |
38822176 |
T |
|
| Q |
561 |
gaggagtgaagaagccacaccgtttccgtcccggaaccgtggcgcttcgtgaaatccgcaagtaccagaagagcactgagcttctgataagaaaacttcc |
660 |
Q |
| |
|
||||||||||||||||||| | ||| | || ||||| || || | | || ||||| ||||| |||||||||||||||||||| || | |||||||| |
|
|
| T |
38822175 |
gaggagtgaagaagccacatagattcagacctggaactgttgctttgagagagatccgtaagtatcagaagagcactgagcttctcatccgtaaacttcc |
38822076 |
T |
|
| Q |
661 |
attccaacgtcttgttcgtgaaatcgctcaggatttcaaaaccgatctcagattccagagcagtgctgtttctgctcttcaagaagctgctgaagcttat |
760 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||||| || ||||| |||||||||||||| || ||||| |||||||||||||||||||||||||| |
|
|
| T |
38822075 |
attccaacgtcttgttcgtgaaattgctcaagatttcaagacagatctgagattccagagcagcgcagtttccgctcttcaagaagctgctgaagcttac |
38821976 |
T |
|
| Q |
761 |
cttgttggtttgtttgaagatacgaatctttgcgctattcatgctaagagagttactattatgcctaaggatattc |
836 |
Q |
| |
|
| |||||| | |||||||| || || ||||| || |||||||||||||||||||| || ||||||||||| |||| |
|
|
| T |
38821975 |
ttggttggtctctttgaagacacaaacctttgtgcaattcatgctaagagagttacaatcatgcctaaggacattc |
38821900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 460 - 836
Target Start/End: Original strand, 26591914 - 26592290
Alignment:
| Q |
460 |
aatggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccactaaagccgcacggaaatcagctccggcgacc |
559 |
Q |
| |
|
|||||||||||| || ||||| |||||||| ||||||||||| ||||| ||| | || || ||||| || |||||||| |||||||| |||||||||||| |
|
|
| T |
26591914 |
aatggcacgtactaagcaaactgcacgcaagtccaccggcggcaaagcaccaaggaagcagctcgcaacaaaagccgctcggaaatccgctccggcgacc |
26592013 |
T |
|
| Q |
560 |
ggaggagtgaagaagccacaccgtttccgtcccggaaccgtggcgcttcgtgaaatccgcaagtaccagaagagcactgagcttctgataagaaaacttc |
659 |
Q |
| |
|
|| |||||||||||||||||||||||| | || |||||||| || || ||||| ||||||||||||||||||||||| || ||||| || | ||||||| |
|
|
| T |
26592014 |
ggcggagtgaagaagccacaccgtttcaggccaggaaccgtcgcactccgtgagatccgcaagtaccagaagagcaccgaacttctcattcgcaaacttc |
26592113 |
T |
|
| Q |
660 |
cattccaacgtcttgttcgtgaaatcgctcaggatttcaaaaccgatctcagattccagagcagtgctgtttctgctcttcaagaagctgctgaagctta |
759 |
Q |
| |
|
| ||||| |||||||||||||| || |||||||||||||| || |||||| | || |||||| |||||| || || || |||||||| || || ||||| |
|
|
| T |
26592114 |
ctttccagcgtcttgttcgtgagattgctcaggatttcaagacggatctccgttttcagagctctgctgtgtcggcgctgcaagaagcggcggaggctta |
26592213 |
T |
|
| Q |
760 |
tcttgttggtttgtttgaagatacgaatctttgcgctattcatgctaagagagttactattatgcctaaggatattc |
836 |
Q |
| |
|
||||||||| |||||||| ||||| || || |||||||||||||||||| | |||||||| |||||||||||||||| |
|
|
| T |
26592214 |
tcttgttggattgtttgaggatactaacctctgcgctattcatgctaagcgtgttactatcatgcctaaggatattc |
26592290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 460 - 836
Target Start/End: Original strand, 25865446 - 25865822
Alignment:
| Q |
460 |
aatggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccactaaagccgcacggaaatcagctccggcgacc |
559 |
Q |
| |
|
|||||| ||||| || ||||| || ||||||||||||||||| || || ||| | || |||||||| || ||||| ||| ||||||| ||||| | ||| |
|
|
| T |
25865446 |
aatggctcgtacgaagcaaactgctcgcaaatccaccggcggcaaggcaccaaggaagcaactcgcgaccaaagctgcaaggaaatctgctccaaccacc |
25865545 |
T |
|
| Q |
560 |
ggaggagtgaagaagccacaccgtttccgtcccggaaccgtggcgcttcgtgaaatccgcaagtaccagaagagcactgagcttctgataagaaaacttc |
659 |
Q |
| |
|
|| |||||||||||||| || |||| ||||| |||||||| || |||||||| ||||| ||||| |||||||| ||||||||| |||| | || |||| |
|
|
| T |
25865546 |
ggcggagtgaagaagcctcatcgttatcgtcctggaaccgttgctcttcgtgagatccgtaagtatcagaagagtactgagcttttgatccgtaagcttc |
25865645 |
T |
|
| Q |
660 |
cattccaacgtcttgttcgtgaaatcgctcaggatttcaaaaccgatctcagattccagagcagtgctgtttctgctcttcaagaagctgctgaagctta |
759 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||||||||||| ||||| ||||| ||||| ||||||| ||| ||||| ||||||||||| ||||| |
|
|
| T |
25865646 |
cattccagcgtcttgttcgtgaaattgctcaggatttcaaaacggatctgagatttcagagtcatgctgttcttgcacttcaggaagctgctgaggctta |
25865745 |
T |
|
| Q |
760 |
tcttgttggtttgtttgaagatacgaatctttgcgctattcatgctaagagagttactattatgcctaaggatattc |
836 |
Q |
| |
|
|||||| || |||||||| ||||| ||| | || || |||||||||||||| || || |||||||| |||||||||| |
|
|
| T |
25865746 |
tcttgtgggattgtttgaggatactaatttgtgtgcaattcatgctaagagggtaacgattatgccaaaggatattc |
25865822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 460 - 836
Target Start/End: Original strand, 41943690 - 41944066
Alignment:
| Q |
460 |
aatggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccactaaagccgcacggaaatcagctccggcgacc |
559 |
Q |
| |
|
|||||| ||||| || ||||| || |||||||||||||| || || || ||| | || ||||| ||||| || || || || ||||| ||||| | ||| |
|
|
| T |
41943690 |
aatggctcgtactaagcaaactgctcgcaaatccaccggtggcaaggctccaaggaagcaactggccaccaaggctgctcgcaaatctgctcctacaacc |
41943789 |
T |
|
| Q |
560 |
ggaggagtgaagaagccacaccgtttccgtcccggaaccgtggcgcttcgtgaaatccgcaagtaccagaagagcactgagcttctgataagaaaacttc |
659 |
Q |
| |
|
|| ||||| ||||| || || || | ||||| || ||||| || |||||||| ||||| || ||||||||||| ||||| ||| |||| | || |||| |
|
|
| T |
41943790 |
ggtggagtcaagaaacctcatcgctatcgtcctggtaccgttgcacttcgtgagatccgtaaataccagaagagtactgatcttttgatccgtaagcttc |
41943889 |
T |
|
| Q |
660 |
cattccaacgtcttgttcgtgaaatcgctcaggatttcaaaaccgatctcagattccagagcagtgctgtttctgctcttcaagaagctgctgaagctta |
759 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||||||| || |||||||||||||||||| ||||||| ||| ||||| ||||| || |||||||| |
|
|
| T |
41943890 |
cattccaacgtcttgttcgtgaaattgctcaagatttcaagacggatctcagattccagagccatgctgttcttgcacttcaggaagcagcagaagctta |
41943989 |
T |
|
| Q |
760 |
tcttgttggtttgtttgaagatacgaatctttgcgctattcatgctaagagagttactattatgcctaaggatattc |
836 |
Q |
| |
|
||| ||||| |||||||| ||||| ||| | || || |||||||||||||| ||||| |||||||| ||||| |||| |
|
|
| T |
41943990 |
tctggttggattgtttgaggataccaatttgtgtgcaattcatgctaagagggttacaattatgccaaaggacattc |
41944066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 737 - 836
Target Start/End: Original strand, 44343978 - 44344077
Alignment:
| Q |
737 |
cttcaagaagctgctgaagcttatcttgttggtttgtttgaagatacgaatctttgcgctattcatgctaagagagttactattatgcctaaggatattc |
836 |
Q |
| |
|
||||| ||||| ||||| |||||||| || || |||||||| ||||| ||| | || ||||||||||||||||| || || |||||||| |||||||||| |
|
|
| T |
44343978 |
cttcaggaagcagctgaggcttatctcgtgggattgtttgaggataccaatttgtgtgctattcatgctaagagggtgacgattatgcccaaggatattc |
44344077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 791 - 836
Target Start/End: Original strand, 38807073 - 38807118
Alignment:
| Q |
791 |
tgcgctattcatgctaagagagttactattatgcctaaggatattc |
836 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
38807073 |
tgcgcaattcatgctaagagagttactatcatgcctaaggacattc |
38807118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 460 - 836
Target Start/End: Original strand, 24860292 - 24860668
Alignment:
| Q |
460 |
aatggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccactaaagccgcacggaaatcagctccggcgacc |
559 |
Q |
| |
|
|||||| ||||| || |||||||| |||||||||||||| |||||||| ||| | || || || || || |||||||| |||||||| ||||| || ||| |
|
|
| T |
24860292 |
aatggctcgtacaaagcaaacagctcgcaaatccaccggaggaaaagcaccaaggaagcagctagcaacaaaagccgcccggaaatccgctccagccacc |
24860391 |
T |
|
| Q |
560 |
ggaggagtgaagaagccacaccgtttccgtcccggaaccgtggcgcttcgtgaaatccgcaagtaccagaagagcactgagcttctgataagaaaacttc |
659 |
Q |
| |
|
|| ||||||||||| || ||||||||||||||||||||||| || ||||| ||||||||||||||||| || ||||| |||||||| || ||||||||| |
|
|
| T |
24860392 |
ggcggagtgaagaaacctcaccgtttccgtcccggaaccgttgcacttcgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttc |
24860491 |
T |
|
| Q |
660 |
cattccaacgtcttgttcgtgaaatcgctcaggatttcaaaaccgatctcagattccagagcagtgctgtttctgctcttcaagaagctgctgaagctta |
759 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||||||||||||||| | |||||||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
24860492 |
cattccaacgtctcgttcgtgaaatcgctcaagatttcaaaaccgatctccgtttccagagtagcgctgtttctgctcttcaagaagctgctgaagctta |
24860591 |
T |
|
| Q |
760 |
tcttgttggtttgtttgaagatacgaatctttgcgctattcatgctaagagagttactattatgcctaaggatattc |
836 |
Q |
| |
|
||| ||||| | ||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
24860592 |
tctcgttggactctttgaagatacaaatctttgcgctattcatgctaagagagttaccattatgcccaaggatattc |
24860668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 460 - 834
Target Start/End: Original strand, 34748501 - 34748875
Alignment:
| Q |
460 |
aatggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccactaaagccgcacggaaatcagctccggcgacc |
559 |
Q |
| |
|
||||||||||||||| ||||| || ||||||||||| || || ||||| ||| | || ||||| ||||| |||||||| || ||||| |||||||| ||| |
|
|
| T |
34748501 |
aatggcacgtaccaagcaaaccgctcgcaaatccactggaggtaaagctccaaggaagcaactagccacaaaagccgctcgcaaatctgctccggccacc |
34748600 |
T |
|
| Q |
560 |
ggaggagtgaagaagccacaccgtttccgtcccggaaccgtggcgcttcgtgaaatccgcaagtaccagaagagcactgagcttctgataagaaaacttc |
659 |
Q |
| |
|
|| ||||||||||| || ||||||||| | || |||||||| || || ||||| ||||| ||||||||||||||||| || || || || | ||||| | |
|
|
| T |
34748601 |
ggtggagtgaagaaacctcaccgtttcagaccaggaaccgtcgctctacgtgagatccgtaagtaccagaagagcaccgaactcctcatccgcaaactcc |
34748700 |
T |
|
| Q |
660 |
cattccaacgtcttgttcgtgaaatcgctcaggatttcaaaaccgatctcagattccagagcagtgctgtttctgctcttcaagaagctgctgaagctta |
759 |
Q |
| |
|
| ||||| ||||| |||||||| ||||||||||||||||| || |||||| | ||||||||| || || || || || |||||||| ||||| ||||| |
|
|
| T |
34748701 |
ccttccagcgtctggttcgtgagatcgctcaggatttcaagactgatctccgtttccagagctccgccgtgtcggcgctgcaagaagcggctgaggctta |
34748800 |
T |
|
| Q |
760 |
tcttgttggtttgtttgaagatacgaatctttgcgctattcatgctaagagagttactattatgcctaaggatat |
834 |
Q |
| |
|
||| |||||| | ||||| ||||| || || || || |||||||| ||| | || ||||| |||||||||||||| |
|
|
| T |
34748801 |
tctcgttggtctctttgaggatactaacctctgtgccattcatgccaagcgtgtcactatcatgcctaaggatat |
34748875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 658 - 714
Target Start/End: Complemental strand, 44771153 - 44771097
Alignment:
| Q |
658 |
tccattccaacgtcttgttcgtgaaatcgctcaggatttcaaaaccgatctcagatt |
714 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44771153 |
tccattccaacgtcttgttcgtgaaatcgctcaggatttcaaaaccgatctcagatt |
44771097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 698 - 810
Target Start/End: Original strand, 53290720 - 53290832
Alignment:
| Q |
698 |
aaaaccgatctcagattccagagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaagatacgaatctttgcgcta |
797 |
Q |
| |
|
||||| |||||||| ||||| |||| | |||||||||||||||| ||| | ||||||||||||||||||||||||||||||||| || ||||| | | |
|
|
| T |
53290720 |
aaaacagatctcaggttccatagcaacgttgtttctgctcttcaaaaagtcgttgaagcttatcttgttggtttgtttgaagatactaacctttgtacca |
53290819 |
T |
|
| Q |
798 |
ttcatgctaagag |
810 |
Q |
| |
|
||||||||||||| |
|
|
| T |
53290820 |
ttcatgctaagag |
53290832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 740 - 831
Target Start/End: Original strand, 40036062 - 40036153
Alignment:
| Q |
740 |
caagaagctgctgaagcttatcttgttggtttgtttgaagatacgaatctttgcgctattcatgctaagagagttactattatgcctaagga |
831 |
Q |
| |
|
||||| ||||||||||| |||||||||||| | ||||| || || || | || ||||| ||||| ||| |||||||||||||||| ||||| |
|
|
| T |
40036062 |
caagaggctgctgaagcatatcttgttggtctctttgaggacactaacttgtgtgctatccatgccaagcgagttactattatgcccaagga |
40036153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 740 - 831
Target Start/End: Original strand, 40045370 - 40045461
Alignment:
| Q |
740 |
caagaagctgctgaagcttatcttgttggtttgtttgaagatacgaatctttgcgctattcatgctaagagagttactattatgcctaagga |
831 |
Q |
| |
|
||||| |||||||| || |||||||||||| | ||||| || || || | |||||||| ||||| ||| |||||||||||||||| ||||| |
|
|
| T |
40045370 |
caagaggctgctgaggcatatcttgttggtctctttgaggacactaacttgtgcgctatccatgccaagcgagttactattatgcccaagga |
40045461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 3e-16; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 690 - 782
Target Start/End: Complemental strand, 17769314 - 17769222
Alignment:
| Q |
690 |
aggatttcaaaaccgatctcagattccagagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaagata |
782 |
Q |
| |
|
||||||||||||| |||||| |||| |||| ||| |||||||||||||||||||||| || |||||||||||||||||| ||| |||||| |
|
|
| T |
17769314 |
aggatttcaaaacagatctccgattttagagtagtactgtttctgctcttcaagaagccagtgtagcttatcttgttggttttttttaagata |
17769222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 704 - 836
Target Start/End: Complemental strand, 7594269 - 7594137
Alignment:
| Q |
704 |
gatctcagattccagagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaagatacgaatctttgcgctattcatg |
803 |
Q |
| |
|
||||| |||||||||||| ||| ||| ||| ||||| ||||| ||||| ||||| || ||||| |||||||| || || ||||| || || ||||||| |
|
|
| T |
7594269 |
gatctgagattccagagccatgcagttcttgcacttcaggaagcagctgaggcttacctggttggattgtttgaggacaccaatctgtgtgcaattcatg |
7594170 |
T |
|
| Q |
804 |
ctaagagagttactattatgcctaaggatattc |
836 |
Q |
| |
|
||||||| || || |||||||| |||||||||| |
|
|
| T |
7594169 |
ctaagagggtgacaattatgccaaaggatattc |
7594137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 609 - 699
Target Start/End: Complemental strand, 7594492 - 7594402
Alignment:
| Q |
609 |
gtgaaatccgcaagtaccagaagagcactgagcttctgataagaaaacttccattccaacgtcttgttcgtgaaatcgctcaggatttcaa |
699 |
Q |
| |
|
|||| ||||| |||||||||||||| ||||||||| |||| | || |||||||| || |||||||| |||||||| ||||| |||||||| |
|
|
| T |
7594492 |
gtgagatccgtaagtaccagaagagtactgagcttttgatccgcaagcttccatttcagcgtcttgtccgtgaaattgctcaagatttcaa |
7594402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 693 - 782
Target Start/End: Complemental strand, 1539263 - 1539174
Alignment:
| Q |
693 |
atttcaaaaccgatctcagattccagagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaagata |
782 |
Q |
| |
|
|||||||||| |||||| |||| |||| ||| |||||||| ||||||||||||| || |||||||||||||||||| ||| |||||| |
|
|
| T |
1539263 |
atttcaaaacagatctccgattttagagtagtactgtttcttctcttcaagaagccagtgtagcttatcttgttggttttttttaagata |
1539174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 690 - 771
Target Start/End: Original strand, 27440873 - 27440954
Alignment:
| Q |
690 |
aggatttcaaaaccgatctcagattccagagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggttt |
771 |
Q |
| |
|
||||||||||||| |||||| |||| |||| || ||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
27440873 |
aggatttcaaaacagatctccgattttagagtagcattgtttctgctcttcaagaagccagtgtagcttatcttgttggttt |
27440954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University