View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11517_low_10 (Length: 224)
Name: NF11517_low_10
Description: NF11517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11517_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 49 - 192
Target Start/End: Original strand, 34698178 - 34698321
Alignment:
| Q |
49 |
ggagtaacaaccttagcttcgggcatgcccttcactttaggtctaaccccaccccaatacccacaaagtgcatgccaaacataaacattctcaacactct |
148 |
Q |
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| T |
34698178 |
ggagtaacaaccttagcttcgggcatgcccttcactttaggtctaaccccaccccaatacccacaaagtgcatgccaaacataaacattctcaacactct |
34698277 |
T |
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| Q |
149 |
taaactcttccttcaagtccctaataaaaccacccatgcctttg |
192 |
Q |
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| T |
34698278 |
taaactcttccttcaagtccctaataaaaccacccatacctttg |
34698321 |
T |
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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 88 - 136
Target Start/End: Original strand, 43563873 - 43563921
Alignment:
| Q |
88 |
ggtctaaccccaccccaatacccacaaagtgcatgccaaacataaacat |
136 |
Q |
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| T |
43563873 |
ggtctcacaccaccccaataaccacaaagtgcatgccaaacataaacat |
43563921 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 136
Target Start/End: Original strand, 36431851 - 36431900
Alignment:
| Q |
87 |
aggtctaaccccaccccaatacccacaaagtgcatgccaaacataaacat |
136 |
Q |
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| T |
36431851 |
aggtctcacaccaccccaagcaccacaaagtgcatgccaaacataaacat |
36431900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 134
Target Start/End: Original strand, 43639547 - 43639596
Alignment:
| Q |
85 |
ttaggtctaaccccaccccaatacccacaaagtgcatgccaaacataaac |
134 |
Q |
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| T |
43639547 |
ttaggcctaatcccaccccaatacccacaaaaagcatgccacacataaac |
43639596 |
T |
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