View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11517_low_2 (Length: 589)
Name: NF11517_low_2
Description: NF11517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11517_low_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 46 - 356
Target Start/End: Complemental strand, 29612129 - 29611821
Alignment:
| Q |
46 |
cttgaaaaagcagggaacgaatgtgtgtaggggtgcagttgtcctgaaaacatgcacatcaaataaaaactttgtgttagatatttgttagaatttgtgt |
145 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |
|
|
| T |
29612129 |
cttgaaaaagcagggaacgaatctgtgtagtagtgcagttgtcctgaaaacatgcacatcaaataaaaact--gtgttagatatttgttagaatttgttt |
29612032 |
T |
|
| Q |
146 |
aggtagttagaagttaattatgattagatggaagtttattatgttagttaacttgggatcacaatataaagttgtatcctaccgtaattgtatcatattc |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
29612031 |
aggtagttagaagttaattatgattagatggaagtttattatgttagttaacttgggatcacaatataaaggtgtatcctaccgtaattgtatcatattc |
29611932 |
T |
|
| Q |
246 |
tttggtctattaattccatataattcatctctctctcaatttatttctcttagttgggctcaaccatgtttctcaacatggtatgggagccatgacatcc |
345 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29611931 |
tttggtctattaattccatataattcatctttctctcaatttatttctcttagttgggctcaaccatgtttctcaacatggtatgggagccatgacatcc |
29611832 |
T |
|
| Q |
346 |
accatgaatgc |
356 |
Q |
| |
|
||||||||||| |
|
|
| T |
29611831 |
accatgaatgc |
29611821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 416 - 571
Target Start/End: Complemental strand, 29611761 - 29611608
Alignment:
| Q |
416 |
gagctggatcatgtcttcaatgagattttgcatctttctccatatgatattactaatatcttgttggatatatgtgagcaatcaaaagtgtcaagtgcat |
515 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
29611761 |
gagctggatcatgtcttcaatgagattttgcatctttctccatatgatattactaatatcttgttggatat--gtgagcaatcaaaagtgtcaagtgcat |
29611664 |
T |
|
| Q |
516 |
actgttctgcaagaaatcttgtatttccaatcaccaaagccatgttggggaggttt |
571 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
29611663 |
actgttctgcaagaaatcttgtatttccaatcaccaaagccatgttagggaggttt |
29611608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 29612183 - 29612147
Alignment:
| Q |
1 |
cctcaatttgtactcaccgttgattgtaatcccaagt |
37 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| |
|
|
| T |
29612183 |
cctcaatttgtactcaccgttgattgtggtcccaagt |
29612147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 4e-24; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 158 - 247
Target Start/End: Original strand, 38467139 - 38467228
Alignment:
| Q |
158 |
gttaattatgattagatggaagtttattatgttagttaacttgggatcacaatataaagttgtatcctaccgtaattgtatcatattctt |
247 |
Q |
| |
|
|||| |||||||||| ||||| ||| |||||||||||||||||||||||| |||||||| ||||||||||| |||||| ||||||||||| |
|
|
| T |
38467139 |
gttagttatgattaggtggaaatttgttatgttagttaacttgggatcactatataaagatgtatcctaccctaattgaatcatattctt |
38467228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 152 - 346
Target Start/End: Complemental strand, 46959071 - 46958876
Alignment:
| Q |
152 |
ttagaagttaattatgattagatggaagtttattatgttagttaacttggga---tcacaatataaagttgtatcctaccgtaattgt-atcatattctt |
247 |
Q |
| |
|
|||||||||| |||||||||| ||||||||| ||| ||||||| ||||| |||| ||| |||| ||||| ||||| ||||| | |||| |||||| |
|
|
| T |
46959071 |
ttagaagttagttatgattaggtggaagtttgttagattagttaccttggatcactcactatacaaaggtgtattctaccctaatttttatcacattctt |
46958972 |
T |
|
| Q |
248 |
tggtctattaattccatataattcatctctctctcaatttatttctcttagttgggctcaaccatgtttctcaacatggtatgggagccatgacatcca |
346 |
Q |
| |
|
| ||||||||||| || ||||| || ||||||| ||||||| |||| |||||| ||||||||| || |||||||||||| ||||||| ||||||| |
|
|
| T |
46958971 |
cattttattaattcca-attattcacctttctctcagtttattt-tcttggttggg-tcaaccatggttttcaacatggtatcagagccataacatcca |
46958876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 184 - 293
Target Start/End: Complemental strand, 25953405 - 25953296
Alignment:
| Q |
184 |
ttatgttagttaacttgggatcacaatataaagttgtatcctaccgtaattgtatcatattctttggtctattaattccatataattcatctctctctca |
283 |
Q |
| |
|
|||||||||||||||| ||| | ||||||| ||||||||||| || || |||||||||||| ||||||| ||| | ||||||||| | | ||||| |
|
|
| T |
25953405 |
ttatgttagttaacttaagattattatataaaagtgtatcctaccctagttatatcatattcttcattctattatttcaaaataattcatatttttctca |
25953306 |
T |
|
| Q |
284 |
atttatttct |
293 |
Q |
| |
|
|||||||||| |
|
|
| T |
25953305 |
atttatttct |
25953296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 329
Target Start/End: Complemental strand, 45518884 - 45518804
Alignment:
| Q |
251 |
tctattaattccatataattcatctctctctcaatttattt--ctcttagttgggctcaaccatgtttctcaacatggtat |
329 |
Q |
| |
|
||||| |||| || ||||| |||| ||||||||||||||| ||||| |||||||| |||||| ||||||||||||||| |
|
|
| T |
45518884 |
tctatcaatttcaaataatcaatctttctctcaatttatttttctctttgttgggctataccatgcttctcaacatggtat |
45518804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 149 - 247
Target Start/End: Complemental strand, 17236659 - 17236561
Alignment:
| Q |
149 |
tagttagaagttaattatgattagatggaagtttattatgttagttaacttgggatcacaatataaagttgtatcctaccgtaattgtatcatattctt |
247 |
Q |
| |
|
||||||||||||| |||||||||| |||||||| ||||||||||||| ||||||||||| ||||||| | |||| ||| |||| ||||||||||||| |
|
|
| T |
17236659 |
tagttagaagttagttatgattaggtggaagttaattatgttagttaccttgggatcactgtataaaggtatatcttactctaatcgtatcatattctt |
17236561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University