View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11517_low_4 (Length: 391)

Name: NF11517_low_4
Description: NF11517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11517_low_4
NF11517_low_4
[»] chr6 (1 HSPs)
chr6 (13-228)||(29885912-29886128)
[»] chr3 (1 HSPs)
chr3 (13-229)||(3347442-3347659)
[»] chr1 (2 HSPs)
chr1 (15-229)||(31932983-31933198)
chr1 (15-228)||(42850872-42851087)
[»] chr4 (3 HSPs)
chr4 (15-234)||(46830700-46830920)
chr4 (80-121)||(26426814-26426855)
chr4 (106-158)||(34401394-34401446)
[»] scaffold0237 (1 HSPs)
scaffold0237 (13-228)||(25463-25681)
[»] chr5 (1 HSPs)
chr5 (232-376)||(9193280-9193423)


Alignment Details
Target: chr6 (Bit Score: 160; Significance: 4e-85; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 13 - 228
Target Start/End: Complemental strand, 29886128 - 29885912
Alignment:
Q  13 agatggaataaagtgagttatctaactatcaacaaacaataaaggcagaattgatttgagcctcaccg---aagctgagatttgtagcttcttgtagaat 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||   |||||||||||||||||||||||||||||    
T  29886128 agatggaataaagtgagttatctaactatcaacaaacaataaaggcagaattgatttaagcctcaccgtagaagctgagatttgtagcttcttgtagaat 29886029  T
Q  110 taattttggaaggttgaattgattttggaaaaggtaaccaaacatgctgcaaagtgnnnnnnnnccacggtgaaggagggcaaacgtcgtttggtaatga 209  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||| |||||||||||||||||| |||    
T  29886028 tgattttggaaggttgaattgattttggaaaaggtaaccaaacatgctgcaaagtg--aaaaaaccacggtgaaggatggcaaacgtcgtttggtagtga 29885931  T
Q  210 aaaaagctacaccaaacag 228  Q
    |||||||||||||||||||    
T  29885930 aaaaagctacaccaaacag 29885912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 13 - 229
Target Start/End: Complemental strand, 3347659 - 3347442
Alignment:
Q  13 agatggaataaagtgagttatctaactatcaacaaacaataaaggcagaattgatttgagcctcaccg---aagctgagatttgtagcttcttgtagaat 109  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||   |||||||||||||||||||||||||||||    
T  3347659 agatggaataaagtgagttatctaactgtcaacaaacaataaaggcagcattgatttgagcctcaccgtagaagctgagatttgtagcttcttgtagaat 3347560  T
Q  110 taattttggaaggttgaattgattttggaaaaggtaaccaaacatgctgcaaagtgnnnnnnnnccacggtgaaggagggcaaacgtcgtttggtaatga 209  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||| |||    
T  3347559 taattttggaaggttgaattgattctggaaaaggtaaccaaacatgctgcaaagtg--aaaaaaccacggtgaaggagggcaaacgtcgtttggtagtga 3347462  T
Q  210 aaaaagctacaccaaacagg 229  Q
    |||||||||| |||||||||    
T  3347461 aaaaagctacgccaaacagg 3347442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 155; Significance: 3e-82; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 15 - 229
Target Start/End: Complemental strand, 31933198 - 31932983
Alignment:
Q  15 atggaataaagtgagttatctaactatcaacaaacaataaaggcagaattgatttgagcctcaccg---aagctgagatttgtagcttcttgtagaatta 111  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||   ||||||||||||||||||||||||||||||     
T  31933198 atggaataaagtgagttatctaactattaacaaacaataaaggcagaattgatttaagcctcaccgtagaagctgagatttgtagcttcttgtagaattg 31933099  T
Q  112 attttggaaggttgaattgattttggaaaaggtaaccaaacatgctgcaaagtgnnnnnnnnccacggtgaaggagggcaaacgtcgtttggtaatgaaa 211  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||| |||||    
T  31933098 attttggaaggttgaattgattctggaaaaggtaaccaaacatgctgcaaagtg--aaaaaaccacggtgaaggagggcaaacgtcgtttggtagtgaaa 31933001  T
Q  212 aaagctacaccaaacagg 229  Q
    ||||||||||||||||||    
T  31933000 aaagctacaccaaacagg 31932983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 15 - 228
Target Start/End: Original strand, 42850872 - 42851087
Alignment:
Q  15 atggaataaagtgagttatctaactatcaacaaa-caataaaggcagaattgatttgagcctcaccg---aagctgagatttgtagcttcttgtagaatt 110  Q
    ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||   ||||||||||||||||||||||||||||||    
T  42850872 atggaataaagtgagttatctaactattaacaaaacaataaaggcagaattgatttaagcctcaccgtagaagctgagatttgtagcttcttgtagaatt 42850971  T
Q  111 aattttggaaggttgaattgattttggaaaaggtaaccaaacatgctgcaaagtgnnnnnnnnccacggtgaaggagggcaaacgtcgtttggtaatgaa 210  Q
     |||||||||||||||||||||| |||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||| ||||    
T  42850972 gattttggaaggttgaattgattctggaaaaggtaaccaaacatgctgcaaagtg--aaaaaaccacggtgaaggagggcaaacgtcgtttggtagtgaa 42851069  T
Q  211 aaaagctacaccaaacag 228  Q
    ||||||||||||||||||    
T  42851070 aaaagctacaccaaacag 42851087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 152; Significance: 2e-80; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 15 - 234
Target Start/End: Original strand, 46830700 - 46830920
Alignment:
Q  15 atggaataaagtgagttatctaactatcaacaaacaataaaggcagaattgatttgagcctcaccg---aagctgagatttgtagcttcttgtagaatta 111  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||   ||||||||||||||||||| ||||||||||     
T  46830700 atggaataaagtgagttatctaactattaacaaacaataaaggcagaattgatttaagcctcaccgtagaagctgagatttgtagctttttgtagaattg 46830799  T
Q  112 attttggaaggttgaattgattttggaaaaggtaaccaaacatgctgcaaagtgnnnnnnnnccacggtgaaggagggcaaacgtcgtttggtaatgaaa 211  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||| |||||    
T  46830800 attttggaaggttgaattgattctggaaaaggtaaccaaacatgctgcaaagtg--aaaaaaccacggtgaaggagggcaaacgtcgtttggtagtgaaa 46830897  T
Q  212 aaagctacaccaaacaggaacta 234  Q
    |||||||||||||||||| ||||    
T  46830898 aaagctacaccaaacaggcacta 46830920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 121
Target Start/End: Original strand, 26426814 - 26426855
Alignment:
Q  80 gaagctgagatttgtagcttcttgtagaattaattttggaag 121  Q
    ||||||||||||||||||||||  ||||||| ||||||||||    
T  26426814 gaagctgagatttgtagcttctcatagaattgattttggaag 26426855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 158
Target Start/End: Complemental strand, 34401446 - 34401394
Alignment:
Q  106 gaattaattttggaaggttgaattgattttggaaaaggtaaccaaacatgctg 158  Q
    ||||| ||||| |||| ||||||||||||| ||||||  ||||||||||||||    
T  34401446 gaattgattttagaagattgaattgattttagaaaagagaaccaaacatgctg 34401394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 13 - 228
Target Start/End: Complemental strand, 25681 - 25463
Alignment:
Q  13 agatggaataaagtgagttatctaactatcaacaaacaat--aaaggcagaattgatttgagcctcaccg---aagctgagatttgtagcttcttgtaga 107  Q
    |||||||||||||||||||||||||||||||||||||||   ||||||||||||||||| ||||||||||   |||||||||||||||||||||||||||    
T  25681 agatggaataaagtgagttatctaactatcaacaaacaaataaaaggcagaattgatttaagcctcaccgtagaagctgagatttgtagcttcttgtaga 25582  T
Q  108 attaattttggaaggttgaattgattttggaaaaggtaaccaaacatgctgcaaagtgnnnnnnnnccacggtgaaggagggcaaacgtcgtttggtaat 207  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||| |||||||||||||||||| |    
T  25581 attgattttggaaggttgaattgattttggaaaaggtaaccaaacatgctgcaaagtg--aaaaaaccacggtgaaggatggcaaacgtcgtttggtagt 25484  T
Q  208 gaaaaaagctacaccaaacag 228  Q
    |||||||||||||||||||||    
T  25483 gaaaaaagctacaccaaacag 25463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 232 - 376
Target Start/End: Original strand, 9193280 - 9193423
Alignment:
Q  232 ctatatatgttctactatcttccatgacttggtaaacaaaagtattaagtttttgaaaaatttaagaataggttaggtgagttaagttttgcaagcctaa 331  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9193280 ctatatatgttctactatcttccatgacttggtaaacaaaagtattaagtttttgaaaaatttaagaataggttaggtgagttaagttttgcaagcctaa 9193379  T
Q  332 ttaagcataatttggtcaagaacattaaggagtctgagctataat 376  Q
    |||||||||||||||||||||||||||| ||||||||||||||||    
T  9193380 ttaagcataatttggtcaagaacattaa-gagtctgagctataat 9193423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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