View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11517_low_5 (Length: 378)
Name: NF11517_low_5
Description: NF11517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11517_low_5 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 145; Significance: 3e-76; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 218 - 378
Target Start/End: Complemental strand, 45567152 - 45566993
Alignment:
| Q |
218 |
ccaccttgactttcatggacttaaggacaccaaattggacagtaagctaattagtaaatactgtagaaacgtgtaataactagtggaatgaaagtttaaa |
317 |
Q |
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| T |
45567152 |
ccaccttgactttcatggacttaaggacaccaaattggacagtaagctaattagtacatactgtagaaacgtgtaataactagtggaatgaaagtttaaa |
45567053 |
T |
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| Q |
318 |
cttaaaccagatgtttgaattttcaaactttctgaacaagggtccaagtgtaattcaccga |
378 |
Q |
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| T |
45567052 |
cttaaaccagatgtctgaattttcaaactttctgaacaagggt-caagtgtaattcaccga |
45566993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 220 - 344
Target Start/End: Complemental strand, 45091526 - 45091402
Alignment:
| Q |
220 |
accttgactttcatggacttaaggacaccaaattggacagtaagctaattagtaaatactgtagaaacgtgtaataactagtggaatgaaagtttaaact |
319 |
Q |
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| T |
45091526 |
accttgactttcatcgacttaaggacactaatttggacagtaagctaattaataaatattgtagaaatgtgtaattactggtggaatgaaagtttaaact |
45091427 |
T |
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| Q |
320 |
taaaccagatgtttgaattttcaaa |
344 |
Q |
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| T |
45091426 |
taaaccaaatgtttgaatttccaaa |
45091402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 301
Target Start/End: Complemental strand, 45085695 - 45085613
Alignment:
| Q |
219 |
caccttgactttcatggacttaaggacaccaaattggacagtaagctaattagtaaatactgtagaaacgtgtaataactagt |
301 |
Q |
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| T |
45085695 |
caccttgactttcatcatcataggggcaccaaatttgaaattaagctaattagtaaataatgtagaaatatgtaattactagt |
45085613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 140; Significance: 3e-73; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 19 - 198
Target Start/End: Complemental strand, 6626446 - 6626268
Alignment:
| Q |
19 |
catcacatcggactaagagcaaccacataaatgagttaaacattcaatcttcacctaaaatcttaaaacattgtgtttatggtcctctcattttatatat |
118 |
Q |
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| T |
6626446 |
catcacatcgaactaagagcaaccacataagtgagttggacattcaatctt-acctaaaaccttaaaacattgtgtttatggtcctctcattttatatat |
6626348 |
T |
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| Q |
119 |
tgcttaagctgaagtagtgtagaacttaaactcacacttaacatattgtaatacctccatattagatggaatttatatta |
198 |
Q |
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| T |
6626347 |
tgcttaagctgaagtagtgtagaatttaaactcacacttaacacattgtaatacctccatattagacggaatttatatta |
6626268 |
T |
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