View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11517_low_6 (Length: 354)
Name: NF11517_low_6
Description: NF11517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11517_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 299; Significance: 1e-168; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 18 - 345
Target Start/End: Original strand, 7768078 - 7768405
Alignment:
| Q |
18 |
ctaccaatttggcttctattgcaaagcttagtggaagttcatatgttaagactgttgctcctgatagnnnnnnncgcagtttggaagtttatgatttcac |
117 |
Q |
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| T |
7768078 |
ctaccaatttggcttctattgcaaagcttagtggaagttcatatgttaagaatgttgctcctgatagaaacgaacgcagtttggaagtttatgatttcac |
7768177 |
T |
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| Q |
118 |
agagaatgatgatttcaatcctttaactccttccaactctcctcctttgcagatttcacgcgatcatttgaagacagagaagcaaaggagtagcagtaaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7768178 |
agagaatgatgatttcaatcctttaactccttccaactctcctcctttccagatttcacgcgatcatttgaagacagagaagcaaaggagtagcagtaaa |
7768277 |
T |
|
| Q |
218 |
agatcatcatacaagtcaaatgacaatcctgaaaataaagctgccatttcttatgtgaagaatatgcatggttcaaggagagatgcatttttgaacataa |
317 |
Q |
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| T |
7768278 |
agatcatcatacaagtcaaatgacaatcctgaaaataaagctgccatttcttatgtgaagaatatgcatggttcaaggagagatgcatttttgaacataa |
7768377 |
T |
|
| Q |
318 |
ttaacaagagacaaaagattgattcatc |
345 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
7768378 |
ttaacaagagacaaaagattgattcatc |
7768405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 26 - 319
Target Start/End: Original strand, 7779068 - 7779388
Alignment:
| Q |
26 |
ttggcttctattgcaaagcttagtggaagttcatatgttaagactgttgctcctgatagnnnnnnncgcagtttggaagtttatgatttcacagagaatg |
125 |
Q |
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||||||| |||| |||||||| ||||||||||||||| ||||| ||||||| ||||||| |||||||| ||||||||||||||||||||||| | |
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| T |
7779068 |
ttggcttatatttcaaagcttggtggaagttcatatgctaagaatgttgcttctgatagcaacaaacgcagtttagaagtttatgatttcacagagaacg |
7779167 |
T |
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| Q |
126 |
atgatttcaatcctttaactccttccaactctcctcctt---------------------tgcagatttcacgcgatcatttgaagacagagaagcaaag |
204 |
Q |
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| T |
7779168 |
acgatttcaatcctgtaactccttccaagtctcccccttctcagactccggataaggtttttcagatttcacgcgatcatttgaagaccaagaagcaagg |
7779267 |
T |
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| Q |
205 |
gagtagcagta---aaagatc---atcatacaagtcaaatgacaatcctgaaaataaagctgccatttcttatgtgaagaatatgcatggttcaaggaga |
298 |
Q |
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|||||| |||| ||||||| |||||| ||||||||| ||||| ||||||||||||||||||| | | | | |||||||||||| ||||||||||| |
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| T |
7779268 |
gagtagtagtagtaaaagatcttcatcatatcagtcaaatggcaatcatgaaaataaagctgccattgcgtgtattaagaatatgcatagttcaaggaga |
7779367 |
T |
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| Q |
299 |
gatgcatttttgaacataatt |
319 |
Q |
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||||||||||||||||||||| |
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| T |
7779368 |
gatgcatttttgaacataatt |
7779388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 34 - 299
Target Start/End: Original strand, 7774271 - 7774560
Alignment:
| Q |
34 |
tattgcaaagcttagtggaagttcatatgttaagactgttgctcctgatagnnnnnnncgcagtttggaagtttatgatttcacagagaatgatgatttc |
133 |
Q |
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||||||||||| | || ||||||| |||| ||||| ||||||| ||||| | ||||||| |||| ||||||||||||||||||| ||||||||| |
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| T |
7774271 |
tattgcaaagcgttgtagaagttcgtatgctaagaatgttgcttctgatggaaacaaacgcagttcggaaatttatgatttcacagagaaggatgatttc |
7774370 |
T |
|
| Q |
134 |
aatcctttaactccttccaactctcctcct---------------------ttgcagatttcacgcgatcatttgaagacagagaagcaaaggagtagca |
212 |
Q |
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| T |
7774371 |
aatcctttaactacttccaactctcctccttctcaaactccggataagaggttccagatttcacgcgatcatacgaagacagagaagcaacggagtagca |
7774470 |
T |
|
| Q |
213 |
gtaaaagatcatc---atacaagtcaaatgacaatcctgaaaataaagctgccatttcttatgtgaagaatatgcatggttcaaggagag |
299 |
Q |
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| T |
7774471 |
gtaaaagatcttcctattataagtcaaatgacaatcctcaaaataaagctgacattgcatatcttaagaatatgaatggttcaagaagag |
7774560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 6e-19; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 167 - 310
Target Start/End: Complemental strand, 12815335 - 12815189
Alignment:
| Q |
167 |
cagatttcacgcgatcatttgaagacagagaagcaaaggagtagcagtaaaagatcatcat---acaagtcaaatgacaatcctgaaaataaagctgcca |
263 |
Q |
| |
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||||| ||||||||||||||||||| |||||||||| | ||||| ||||||||||||||| |||||| || |||||| ||||||||||||||| |
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| T |
12815335 |
cagatctcacgcgatcatttgaagaaagagaagcaaggaagtagtggtaaaagatcatcatcaggcaagtcttcggataatcctcaaaataaagctgcca |
12815236 |
T |
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| Q |
264 |
tttcttatgtgaagaatatgcatggttcaaggagagatgcatttttg |
310 |
Q |
| |
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| T |
12815235 |
gggcatatgttaggaatatgcctggttcaaggagaggtgcatttttg |
12815189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 167 - 310
Target Start/End: Complemental strand, 12752375 - 12752229
Alignment:
| Q |
167 |
cagatttcacgcgatcatttgaagacagagaagcaaaggagtagcagtaaaagatcatcata---caagtcaaatgacaatcctgaaaataaagctgcca |
263 |
Q |
| |
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||||| ||||||||||||||||||| |||||||||| | | ||| ||||||||||||||| |||||| || |||||| ||||||||||||||| |
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| T |
12752375 |
cagatctcacgcgatcatttgaagaaagagaagcaaggaattagtggtaaaagatcatcatcaggcaagtcttcggataatcctcaaaataaagctgcca |
12752276 |
T |
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| Q |
264 |
tttcttatgtgaagaatatgcatggttcaaggagagatgcatttttg |
310 |
Q |
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| ||||| | |||||||| |||||||||||||| |||||||||| |
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| T |
12752275 |
gggcatatgttaggaatatgcctggttcaaggagaggtgcatttttg |
12752229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 35 - 164
Target Start/End: Complemental strand, 12752613 - 12752484
Alignment:
| Q |
35 |
attgcaaagcttagtggaagttcatatgttaagactgttgctcctgatagnnnnnnncgcagtttggaagtttatgatttcacagagaatgatgatttca |
134 |
Q |
| |
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|||||||||| | |||| |||||||||| | ||| |||||||||||||| ||||| |||||| | ||||||| | ||||||||||| ||||| |
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| T |
12752613 |
attgcaaagcctggtgggagttcatatgctgagaatgttgctcctgataaaagcaaatgcagtctggaagctaatgattttatagagaatgatgttttca |
12752514 |
T |
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| Q |
135 |
atcctttaactccttccaactctcctcctt |
164 |
Q |
| |
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|| | ||||||||| |||||||||| |||| |
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| T |
12752513 |
atgccttaactcctcccaactctccccctt |
12752484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 35 - 164
Target Start/End: Complemental strand, 12815573 - 12815444
Alignment:
| Q |
35 |
attgcaaagcttagtggaagttcatatgttaagactgttgctcctgatagnnnnnnncgcagtttggaagtttatgatttcacagagaatgatgatttca |
134 |
Q |
| |
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|||||||||| | |||| |||||||||| | ||| |||||||||||||| ||||| |||||| | ||||||| | ||||||||||| ||||| |
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| T |
12815573 |
attgcaaagcctggtgggagttcatatgctgagaatgttgctcctgataaaagcaaatgcagtctggaagctaatgattttatagagaatgatgttttca |
12815474 |
T |
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| Q |
135 |
atcctttaactccttccaactctcctcctt |
164 |
Q |
| |
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|| | ||||||||| |||||||||| |||| |
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| T |
12815473 |
atgccttaactcctcccaactctccccctt |
12815444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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