View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11517_low_8 (Length: 239)
Name: NF11517_low_8
Description: NF11517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11517_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 4 - 223
Target Start/End: Original strand, 2358032 - 2358251
Alignment:
| Q |
4 |
aatatcttttggactagaaatgatgcatttaattttggctaattttttgcattcatttgaaatcttgtattcatcgagtgagcctattgatatgacagaa |
103 |
Q |
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| T |
2358032 |
aatatcttttggactagaaatgatgcatttaattttggctaattttttgcattcatttgaaatcttgtattcatcgagtgagcctattgatatgacagaa |
2358131 |
T |
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| Q |
104 |
gtctttggattgacggtctccaaagctaccccacttgagattctggttaaaccatgtttgtctgttaattgctacgaaactatgtaaacaatggaagatt |
203 |
Q |
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| T |
2358132 |
gtctttggattgacggtctccaaagctaccccacttgagattctggttaaaccatgtttgtctgttaattgctacgaaactatgtaaacaatggaagatt |
2358231 |
T |
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| Q |
204 |
caacctattggccattatca |
223 |
Q |
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|||||||||||||||||||| |
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| T |
2358232 |
caacctattggccattatca |
2358251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 188
Target Start/End: Original strand, 2369110 - 2369277
Alignment:
| Q |
21 |
aaatgatgcatttaattttggctaattttttgcattcatttgaaatcttgtattcatcgagtgagcctattgatatgacagaagtctttggattgacggt |
120 |
Q |
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| T |
2369110 |
aaatggtgcatttaactttggctagttttttgcattcctttgaaatcttaaatccatcaagtgaacctattgatatgactgaaacttttggattaaccaa |
2369209 |
T |
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| Q |
121 |
ctccaaagctaccccacttgagattctggttaaaccatgtttgtctgttaattgctacgaaactatgt |
188 |
Q |
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| T |
2369210 |
caccaaaacaactcctcttgagattcttattaagccacgtttgtcttcgaattgctatgaaattatgt |
2369277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 21 - 98
Target Start/End: Original strand, 2363364 - 2363441
Alignment:
| Q |
21 |
aaatgatgcatttaattttggctaattttttgcattcatttgaaatcttgtattcatcgagtgagcctattgatatga |
98 |
Q |
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| T |
2363364 |
aaatgctgcatttaactttggctagttttttgcattcctttgaaatcttaaatccatcaagtgaacctattgatatga |
2363441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 2261263 - 2261198
Alignment:
| Q |
1 |
aggaatatcttttggactagaaatgatgcatttaattttggctaattttttgcattcatttgaaat |
66 |
Q |
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| T |
2261263 |
aggaatatcttttggtcttcatatgattcatttaactttggctaattttttacactcctttgaaat |
2261198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 166
Target Start/End: Original strand, 2340381 - 2340425
Alignment:
| Q |
122 |
tccaaagctaccccacttgagattctggttaaaccatgtttgtct |
166 |
Q |
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| T |
2340381 |
tccaaagctactccacttgagattctcattaaaccacgtttgtct |
2340425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 4306042 - 4306109
Alignment:
| Q |
1 |
aggaatatcttttggactagaaatgatgcatttaattttggctaattttttgcattcatttgaaatct |
68 |
Q |
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||||||||||| ||| || ||||| |||||||| |||||||| |||||||||||| |||||||||| |
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| T |
4306042 |
aggaatatcttatggccttcaaatggtgcatttatctttggctagttttttgcattcctttgaaatct |
4306109 |
T |
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