View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11518_high_3 (Length: 396)
Name: NF11518_high_3
Description: NF11518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11518_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 343; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 15 - 378
Target Start/End: Complemental strand, 50384991 - 50384628
Alignment:
| Q |
15 |
gagaccaacatagcctttaagaattcccaaaaccgcgccgcgagattcagggaaattcttaacacaagtcacaagtgaaccagtgtttgcaaaagactga |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50384991 |
gagaccaacatagcctttaagaattcccaaaaccgcgccgcgagattcagggaaattcttaacacaagtcacaagtgaaccagtgtttgcaaaagactga |
50384892 |
T |
|
| Q |
115 |
gaattagcacctatacaaatgtaaagacacatttgccaaacttgtggtcttgctannnnnnnggtaactgataaccaaatcatgaagtaaccaaagaaat |
214 |
Q |
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| T |
50384891 |
gaattagcacctatacaaatgtaaagacacatttgccaaacttgtggtcttgctatttttttggtaactgataaccaaatcatgaagtaaccaaagaaat |
50384792 |
T |
|
| Q |
215 |
tgagaatagcacctattgtcaaaactacccaaggtggatagagttcgttgattagtcctgaaaggacaccaacgttgctaccaaagtctttgaaaaaact |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50384791 |
tgagaatagcacctattgtcaaaactacccaaggtggatagagttcgttgattagtcctgaaaggacaccaacgttgctaccaaagtctttgaaaaaact |
50384692 |
T |
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| Q |
315 |
aaggaggttcagtgtactttggtcatagccaagtgttgtttttatgtctggggagtatagaccg |
378 |
Q |
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| T |
50384691 |
aaggaggttcagtgtactttggtcatagccaagtgttgtttttatgtctggggagtatagaccg |
50384628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 16 - 377
Target Start/End: Complemental strand, 50393409 - 50393048
Alignment:
| Q |
16 |
agaccaacatagcctttaagaattcccaaaaccgcgccgcgagattcagggaaattcttaacacaagtcacaagtgaaccagtgtttgcaaaagactgag |
115 |
Q |
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||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50393409 |
agaccaacataacctttaagaattcccaaaaccgctccgcgagattcagggaaattcttaacacaagtcacaagtgaaccagtgtttgcaaaagactgag |
50393310 |
T |
|
| Q |
116 |
aattagcacctatacaaatgtaaagacacatttgccaaacttgtggtcttgctannnnnnnggtaactgataaccaaatcatgaagtaaccaaagaaatt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||| ||||||||||| || || |
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| T |
50393309 |
aattagcacctatacaaatgtaaagacacatttgccaaacttttggtcttgctatttttttggtgactgataaccaaatcataaagtaaccaaaaaagtt |
50393210 |
T |
|
| Q |
216 |
gagaatagcacctattgtcaaaactacccaaggtggatagagttcgttgattagtcctgaaaggacaccaacgttgctaccaaagtctttgaaaaaacta |
315 |
Q |
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|| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||| |
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| T |
50393209 |
tagtatagcacctattgttaaaactacccaaggtggatagagttcgttgactagtcctgcaaggacaccaacgttgctaccaaaatctttgaaaaaacta |
50393110 |
T |
|
| Q |
316 |
aggaggttcagtgtactttggtcatagccaagtgttgtttttatgtctggggagtatagacc |
377 |
Q |
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|||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
50393109 |
aggaggtttagtgtgctttggtcatagccaagtgttgtttttatgtcgccggagtatagacc |
50393048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 16 - 378
Target Start/End: Complemental strand, 50390135 - 50389773
Alignment:
| Q |
16 |
agaccaacatagcctttaagaattcccaaaaccgcgccgcgagattcagggaaattcttaacacaagtcacaagtgaaccagtgtttgcaaaagactgag |
115 |
Q |
| |
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||||||| ||| ||||| |||||||||||||| || ||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
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| T |
50390135 |
agaccaagatatccttttagaattcccaaaacagctccgcgagattcggggaaattcttaacacaagtaacaagtgaaccggtgtttgcaaaagactgag |
50390036 |
T |
|
| Q |
116 |
aattagcacctatacaaatgtaaagacacatttgccaaacttgtggtcttgctannnnnnnggtaactgataaccaaatcatgaagtaaccaaagaaatt |
215 |
Q |
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||||||||||||| |||||||||||||||||||||||||| ||||||||||| | || | |||||||||||||||||||||||||||||||| |
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| T |
50390035 |
aattagcacctatgcaaatgtaaagacacatttgccaaacatgtggtcttgcaattttttttgttatggataaccaaatcatgaagtaaccaaagaaatt |
50389936 |
T |
|
| Q |
216 |
gagaatagcacctattgtcaaaactacccaaggtggatagagttcgttgattagtcctgaaaggacaccaacgttgctaccaaagtctttgaaaaaacta |
315 |
Q |
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|| ||||||||||||| |||||||||||||||||| ||| ||||||||||||||||| ||||| |||||| ||||||||||| ||||||||||||||| |
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| T |
50389935 |
aagtatagcacctattgctaaaactacccaaggtggagagatttcgttgattagtcctgcaaggataccaacattgctaccaaaatctttgaaaaaacta |
50389836 |
T |
|
| Q |
316 |
aggaggttcagtgtactttggtcatagccaagtgttgtttttatgtctggggagtatagaccg |
378 |
Q |
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||||||| ||||| ||||||||||||||||||||| ||||||||| ||||||||||||| |
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| T |
50389835 |
aggaggtctagtgtgctttggtcatagccaagtgtttcttttatgtcgctggagtatagaccg |
50389773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 16 - 342
Target Start/End: Complemental strand, 50407022 - 50406696
Alignment:
| Q |
16 |
agaccaacatagcctttaagaattcccaaaaccgcgccgcgagattcagggaaattcttaacacaagtcacaagtgaaccagtgtttgcaaaagactgag |
115 |
Q |
| |
|
||||||||||| ||||| | ||| ||||| || | || |||| ||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||| |
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| T |
50407022 |
agaccaacataaccttttaaaatccccaacacaacaccacgagtttcggggaaattcttaacacaagtaacaagtgaaccagtgtttgaaaaagactgag |
50406923 |
T |
|
| Q |
116 |
aattagcacctatacaaatgtaaagacacatttgccaaacttgtggtcttgctannnnnnnggtaactgataaccaaatcatgaagtaaccaaagaaatt |
215 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||| ||| || || |||| |||||| ||||| |||||||||||||| || |
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| T |
50406922 |
aattagcacctatacaaatgtaaagacacatttgccaaactttcggttttggtatttttttagtcactgctaaccatatcataaagtaaccaaagaagtt |
50406823 |
T |
|
| Q |
216 |
gagaatagcacctattgtcaaaactacccaaggtggatagagttcgttgattagtcctgaaaggacaccaacgttgctaccaaagtctttgaaaaaacta |
315 |
Q |
| |
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|||| | ||| |||| | ||| || ||||||| || ||| ||||||| || || | ||||||| ||||| ||| ||||||||||| |||||| |
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| T |
50406822 |
aagaagggaaccaattgcaagaacaacataaggtggtgtgatttcattgattaagccagagaaaacaccaaggttgccacctaagtctttgaagaaacta |
50406723 |
T |
|
| Q |
316 |
aggaggttcagtgtactttggtcatag |
342 |
Q |
| |
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|||||||| || || ||||||||||| |
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| T |
50406722 |
aggaggttaagagttgtttggtcatag |
50406696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 63 - 157
Target Start/End: Complemental strand, 41334043 - 41333949
Alignment:
| Q |
63 |
agggaaattcttaacacaagtcacaagtgaaccagtgtttgcaaaagactgagaattagcacctatacaaatgtaaagacacatttgccaaactt |
157 |
Q |
| |
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||||||||||||||||||||| || | | ||| ||||| | ||||| |||||||| ||||| || ||||| |||||||||||||||||||||| |
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| T |
41334043 |
agggaaattcttaacacaagtaactaaagcacctgtgttagtaaaagtttgagaatttgcaccaatgcaaatataaagacacatttgccaaactt |
41333949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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