View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11518_high_4 (Length: 241)
Name: NF11518_high_4
Description: NF11518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11518_high_4 |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 3 - 238
Target Start/End: Original strand, 39928542 - 39928773
Alignment:
| Q |
3 |
catagaagaagcattattattcacggacagtttgaatgaaactaagattcgaatcataaaataagtacctcttcatatgggaaaccaatgacccatatgt |
102 |
Q |
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| T |
39928542 |
catagaagaagcattattattcacggacagtttgaatgaaactaagattcaaatcataaaataagtacctcttcatatgggaaaccaatgacccatatgt |
39928641 |
T |
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| Q |
103 |
tcatccaccaagaaaaactttcgcttggaatgattcttgataatataaaatggaaagattaaaataaaagtatgtatatgttgctgagagtggcgtgacg |
202 |
Q |
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| T |
39928642 |
tcatccaccaagaaaaactttcgcttggaatgattcttgagaatataaaatggaaagatttaaataaaagtatgtatatgttgctgagagtggcgtgacg |
39928741 |
T |
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| Q |
203 |
tgacttgaagctgcatggagaccatttccttttctt |
238 |
Q |
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| T |
39928742 |
tgacttgaagc----cggagaccatttccttttctt |
39928773 |
T |
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Target: scaffold0024 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 201 - 238
Target Start/End: Complemental strand, 51489 - 51452
Alignment:
| Q |
201 |
cgtgacttgaagctgcatggagaccatttccttttctt |
238 |
Q |
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| T |
51489 |
cgtgacttgaagctgcacggagaccatttccttttctt |
51452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 201 - 238
Target Start/End: Complemental strand, 24994805 - 24994768
Alignment:
| Q |
201 |
cgtgacttgaagctgcatggagaccatttccttttctt |
238 |
Q |
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| T |
24994805 |
cgtgacttgaagctgcacggagaccatttccttttctt |
24994768 |
T |
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