View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11518_low_1 (Length: 701)
Name: NF11518_low_1
Description: NF11518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11518_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 582; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 582; E-Value: 0
Query Start/End: Original strand, 77 - 694
Target Start/End: Original strand, 11592281 - 11592898
Alignment:
| Q |
77 |
agctagaacataccttagtggccctaggctccaagtaaacagagttaacaaaaacagtcaaaagagaagccaaaaggttccaagtttgcataacaccacc |
176 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
11592281 |
agctagaacataccttagtggccctaggctccaagtaaacagagttaacaaaaacagtcaaaagagaagccaaaaggttccaagattgcataacaccacc |
11592380 |
T |
|
| Q |
177 |
accattattgtttctcattccatgtccaaaaacatgacccaacaaagcaaccaataaacaataacccatagccctaaaataaacaggataaatcttactc |
276 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11592381 |
accattattgtttctcattccatgtccaaaaacatgacccaacaaagcaaccaataaacaataacccatagccctaaaataaacaggataaatcttactc |
11592480 |
T |
|
| Q |
277 |
tggaccacagcaaattgttgtcttggcataaccctagacaaaacataactagaaacaaatgttatccaaacattcattccataaccacttgaaaatccca |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
11592481 |
tggaccacagcaaattgttgtcttggcataaccctagacaaaacataactagaaacaaatgtgatccaaacattcattccataaccacttgaaaatccca |
11592580 |
T |
|
| Q |
377 |
ataaattcaacaaactcatcaatgattcaactctctccattgataatgacataaacttcttcacaccgtctttcgcttcggtcacgttgtgaacaacatg |
476 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
11592581 |
acaaattcaacaaactcatcaatgattcaactctctccattgataatgacataaacttcttcacaccgtctttcgcctcggtcacgttgtgaacaacatg |
11592680 |
T |
|
| Q |
477 |
ttccttaaacgtttgtcccatctctttccctttttctaatgacccttttgtgtattcttgaacattatcataaacatcatttgctttatcataaactctc |
576 |
Q |
| |
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||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11592681 |
ttctttaaacgtttgtcccatttctttgcctttttctaatgacccttttgtgtattcttgaacattatcataaacatcatttgctttatcataaactctc |
11592780 |
T |
|
| Q |
577 |
tctttagcattatcaactgcatcaacaacattgttaccaacttctttcactgcttctttgtttgaataaacaatatctctcttcttatcaattgtttctg |
676 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
11592781 |
tctttagcattatcaactgcatcaacaacattgttaccaacttctttcactgcttctttgtttgaattaacaatatctctcttcttatcaattgtttctg |
11592880 |
T |
|
| Q |
677 |
aagctttatcctttgctt |
694 |
Q |
| |
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| |||||||||||||||| |
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| T |
11592881 |
aggctttatcctttgctt |
11592898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 582; E-Value: 0
Query Start/End: Original strand, 77 - 694
Target Start/End: Complemental strand, 11645838 - 11645221
Alignment:
| Q |
77 |
agctagaacataccttagtggccctaggctccaagtaaacagagttaacaaaaacagtcaaaagagaagccaaaaggttccaagtttgcataacaccacc |
176 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
11645838 |
agctagaacataccttagtggccctaggctccaagtaaacagagttaacaaaaacagtcaaaagagaagccaaaaggttccaagattgcataacaccacc |
11645739 |
T |
|
| Q |
177 |
accattattgtttctcattccatgtccaaaaacatgacccaacaaagcaaccaataaacaataacccatagccctaaaataaacaggataaatcttactc |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11645738 |
accattattgtttctcattccatgtccaaaaacatgacccaacaaagcaaccaataaacaataacccatagccctaaaataaacaggataaatcttactc |
11645639 |
T |
|
| Q |
277 |
tggaccacagcaaattgttgtcttggcataaccctagacaaaacataactagaaacaaatgttatccaaacattcattccataaccacttgaaaatccca |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
11645638 |
tggaccacagcaaattgttgtcttggcataaccctagacaaaacataactagaaacaaatgtgatccaaacattcattccataaccacttgaaaatccca |
11645539 |
T |
|
| Q |
377 |
ataaattcaacaaactcatcaatgattcaactctctccattgataatgacataaacttcttcacaccgtctttcgcttcggtcacgttgtgaacaacatg |
476 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
11645538 |
acaaattcaacaaactcatcaatgattcaactctctccattgataatgacataaacttcttcacaccgtctttcgcctcggtcacgttgtgaacaacatg |
11645439 |
T |
|
| Q |
477 |
ttccttaaacgtttgtcccatctctttccctttttctaatgacccttttgtgtattcttgaacattatcataaacatcatttgctttatcataaactctc |
576 |
Q |
| |
|
||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11645438 |
ttctttaaacgtttgtcccatttctttgcctttttctaatgacccttttgtgtattcttgaacattatcataaacatcatttgctttatcataaactctc |
11645339 |
T |
|
| Q |
577 |
tctttagcattatcaactgcatcaacaacattgttaccaacttctttcactgcttctttgtttgaataaacaatatctctcttcttatcaattgtttctg |
676 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
11645338 |
tctttagcattatcaactgcatcaacaacattgttaccaacttctttcactgcttctttgtttgaattaacaatatctctcttcttatcaattgtttctg |
11645239 |
T |
|
| Q |
677 |
aagctttatcctttgctt |
694 |
Q |
| |
|
| |||||||||||||||| |
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|
| T |
11645238 |
aggctttatcctttgctt |
11645221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 352 - 694
Target Start/End: Complemental strand, 37181056 - 37180715
Alignment:
| Q |
352 |
attccataaccacttgaaaatccc-aataaattcaacaaactcatcaatgattcaactctctccattgataatgacataaacttcttcacaccgtctttc |
450 |
Q |
| |
|
|||||||||||||||| ||||||| || ||||||||| || |||||||||||||||||||||| |||||||||| ||||||||| |||||||||| |
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| T |
37181056 |
attccataaccacttgcaaatccctaacaaattcaactctttcgtcaatgattcaactctctccatagataatgacacaaacttctttacaccgtcttat |
37180957 |
T |
|
| Q |
451 |
gcttcggtcacgttgtgaacaacatgttccttaaacgtttgtcccatctctttc-cctttttctaatgacccttttgtgtattcttgaacattatcataa |
549 |
Q |
| |
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| ||||||||||| | ||||||||||||| || ||||||||||| | ||| |||||||| ||||||||||||||| | |||||||||||||||||| |
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| T |
37180956 |
gtctcggtcacgtt---accaacatgttccttcaatgtttgtcccatttttttttcctttttccaatgacccttttgtggaatcttgaacattatcataa |
37180860 |
T |
|
| Q |
550 |
acatcatttgctttatcataaactctctctttagcattatcaactgcatcaacaacattgttaccaacttctttcactgcttctttgtttgaataaacaa |
649 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
37180859 |
acatcattagctttatcataaactttctctttaacattatcaactgcatcaacaacattgttaccaacttctttcactgcttctttgtttgcataaacaa |
37180760 |
T |
|
| Q |
650 |
tatctctcttcttatcaattgtttctgaagctttatcctttgctt |
694 |
Q |
| |
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|||||||||||||||||||||||| ||| |||||||||||||||| |
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|
| T |
37180759 |
tatctctcttcttatcaattgtttatgaggctttatcctttgctt |
37180715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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