View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11518_low_3 (Length: 405)
Name: NF11518_low_3
Description: NF11518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11518_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 6 - 388
Target Start/End: Complemental strand, 4910978 - 4910596
Alignment:
| Q |
6 |
ataacaaatatcattcattcaatcatgcattatgtataactttattagagtctaacctcttctattgaactcaatccccgttggttcatcaacttttacg |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
4910978 |
ataacaaatatcattcattcaatcatgcattatgtataactttatcagagtctaacctcttctattgaactcaatccctgttggttcatcaacttttacg |
4910879 |
T |
|
| Q |
106 |
attcttactttattatttatacacctcgaacataacactagattttgactggtcccaatagaacacaagttcatgaaagtaaaatatacatgtaattaat |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4910878 |
attcttactttattatttatacacctcgaacataacactagagtttgactggtcccaatagaacacaagttcatgaaagtaaaatatacatgtaattaat |
4910779 |
T |
|
| Q |
206 |
taaacatacacatcaatctcaatctatattctgtggggaatgagagatcctaaccaaattattatcacgaacattgcaagatctcttacatgagaaaaaa |
305 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4910778 |
taaacatacacatcaatctcaatctatgttctgtggggaatgagagatcctaaccaaattattatcacgaacattgcaagatctcttacatgagaaaaaa |
4910679 |
T |
|
| Q |
306 |
gacatatttttcactaaccttgattcacaaaaactactactaccaggtctactcatctttttatccctcttaccacttttctg |
388 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4910678 |
gacatgtttttcactaaccttgattcacaaaaactactactaccaggtctactcatctttttatccctcttaccacttttctg |
4910596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University