View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11518_low_5 (Length: 358)
Name: NF11518_low_5
Description: NF11518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11518_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 160; Significance: 3e-85; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 126 - 336
Target Start/End: Original strand, 3951232 - 3951440
Alignment:
| Q |
126 |
tgtagatattgatagagctgtaaagtaagacaaaaacttttttgtgaccttcttccatatattcaatgtcctgcacacttttatgcagaaatcattgtat |
225 |
Q |
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| T |
3951232 |
tgtagatattgttagagctttaaagtaagacaaaaacttttttgtgaccttcttccatatatataatgtcctgcacacttttatgcagaaaccgttgtat |
3951331 |
T |
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| Q |
226 |
aataatactaaacatttactctgcagaaattagagtaaactgtcattttggtctttaaagtcaagaattgggacttgaaaacttcgtcacacgtgtaact |
325 |
Q |
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|||||||||||| ||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
3951332 |
aataatactaaaaatttactctgcagaaattagagtaaac--tcattttgttccttaaagtcaagaattgggacttgaaaacttcgtcacacgtgtagct |
3951429 |
T |
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| Q |
326 |
cggagggattt |
336 |
Q |
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||||||||||| |
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| T |
3951430 |
cggagggattt |
3951440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 126 - 306
Target Start/End: Complemental strand, 4027638 - 4027464
Alignment:
| Q |
126 |
tgtagatattgatagagctgtaaagtaagacaaaaacttttttgtgaccttcttccatatattcaatgtcctgcacacttttatgcagaaatcattgtat |
225 |
Q |
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||||||||||| ||||||| ||||||||| ||||| |||||||||||||| | ||||||| ||||||||||||||| ||| |||||||||||||| |
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| T |
4027638 |
tgtagatattgtatgagctgtgaagtaagaccaaaacctttttgtgaccttcct---tatattctatgtcctgcacactt--atgtagaaatcattgtat |
4027544 |
T |
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| Q |
226 |
aataatactaaacatttactctgcagaaattagagtaaactgtcattttggtctttaaagtcaagaattgggacttgaaaa |
306 |
Q |
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| T |
4027543 |
aatagaactaaatattaatt-tgcagatattagagcaaactatcattttggtccttaatgtcaagaattgggacttgaaaa |
4027464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 18 - 127
Target Start/End: Original strand, 3950995 - 3951102
Alignment:
| Q |
18 |
gttccggtaataaccttgtgtttcccttatcgcactgttcaaggttctagagacaaagaaagattattcatagtgcacttgttccaatccaatggcatat |
117 |
Q |
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|||||| ||||||||||||||||||||||| | ||||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||| |
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| T |
3950995 |
gttccgttaataaccttgtgtttcccttattgtgacgttcaaggttctagagaca--gaaagattgttcgtagtgcacttgttccaatccaatggcatat |
3951092 |
T |
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| Q |
118 |
ttgtcttctg |
127 |
Q |
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||| |||||| |
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| T |
3951093 |
ttgccttctg |
3951102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 25 - 127
Target Start/End: Complemental strand, 4005409 - 4005307
Alignment:
| Q |
25 |
taataaccttgtgtttcccttatcgcactgttcaaggttctagagacaaagaaagattattcatagtgcacttgttccaatccaatggcatatttgtctt |
124 |
Q |
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| T |
4005409 |
taataaccttgtgtttcccttattgcgttattcaaggttctagagacgaagaaagattgttcagagtgcacttgttccagttcaatggcatatttatctt |
4005310 |
T |
|
| Q |
125 |
ctg |
127 |
Q |
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||| |
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| T |
4005309 |
ctg |
4005307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 25 - 125
Target Start/End: Complemental strand, 3991348 - 3991248
Alignment:
| Q |
25 |
taataaccttgtgtttcccttatcgcactgttcaaggttctagagacaaagaaagattattcatagtgcacttgttccaatccaatggcatatttgtctt |
124 |
Q |
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||||||||||||||||||||||| | | |||||||||||| |||| |||||||||| |||| |||| | |||||||||| ||||||| ||||||||| |
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| T |
3991348 |
taataaccttgtgtttcccttattgatatattcaaggttctacagacgaagaaagattgttcagagtgaagttgttccaattcaatggcgcatttgtctt |
3991249 |
T |
|
| Q |
125 |
c |
125 |
Q |
| |
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| |
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| T |
3991248 |
c |
3991248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 18 - 121
Target Start/End: Complemental strand, 4027882 - 4027779
Alignment:
| Q |
18 |
gttccggtaataaccttgtgtttcccttatcgcactgttcaaggttctagagacaaagaaagattattcatagtgcacttgttccaatccaatggcatat |
117 |
Q |
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|||||||||||| |||||||||||||||| | | | ||| |||| |||||||| ||||||||| |||| |||||| |||||||||| ||||||| ||| |
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| T |
4027882 |
gttccggtaatattcttgtgtttcccttattgtaattttcgaggtcctagagacgaagaaagatcgttcagagtgcatttgttccaattcaatggcgtat |
4027783 |
T |
|
| Q |
118 |
ttgt |
121 |
Q |
| |
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|||| |
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|
| T |
4027782 |
ttgt |
4027779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 125
Target Start/End: Complemental strand, 4013653 - 4013555
Alignment:
| Q |
27 |
ataaccttgtgtttcccttatcgcactgttcaaggttctagagacaaagaaagattattcatagtgcacttgttccaatccaatggcatatttgtcttc |
125 |
Q |
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|||| |||||||||||||||| | ||||||||||||||||||| |||||||||| ||| ||| | |||||||||| ||||||| ||||||||||| |
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| T |
4013653 |
ataatcttgtgtttcccttattgtgatgttcaaggttctagagacgaagaaagattgttccgtgtgaaattgttccaattcaatggcgtatttgtcttc |
4013555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 183 - 255
Target Start/End: Complemental strand, 3990611 - 3990538
Alignment:
| Q |
183 |
tatattcaatgtcctgcacacttttatgcag-aaatcattgtataataatactaaacatttactctgcagaaat |
255 |
Q |
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||||||| |||| ||||||||||||||||| |||||||||||||||| | ||||| |||||| ||||||||| |
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| T |
3990611 |
tatattctctgtcttgcacacttttatgcaggaaatcattgtataatagttctaaagctttactttgcagaaat |
3990538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 84 - 127
Target Start/End: Complemental strand, 4215900 - 4215857
Alignment:
| Q |
84 |
ttcatagtgcacttgttccaatccaatggcatatttgtcttctg |
127 |
Q |
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|||||| |||||||||||||| |||||| ||||||||||||||| |
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| T |
4215900 |
ttcatactgcacttgttccaaaccaatgtcatatttgtcttctg |
4215857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 22 - 127
Target Start/End: Complemental strand, 13400594 - 13400491
Alignment:
| Q |
22 |
cggtaataaccttgtgtttcccttatcgcactgttcaaggttctagagacaaagaaagattattcatagtgcacttgttccaatccaatggcatatttgt |
121 |
Q |
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| T |
13400594 |
cggtaataaccttgtgtttcccttattgcgatgttcaaggttcttgagacaaagaaagattgttcata--gcgcttgttccaatccaatggcatattttt |
13400497 |
T |
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| Q |
122 |
cttctg |
127 |
Q |
| |
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|||||| |
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|
| T |
13400496 |
cttctg |
13400491 |
T |
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