View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11518_low_7 (Length: 231)
Name: NF11518_low_7
Description: NF11518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11518_low_7 |
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| [»] chr2 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 231
Target Start/End: Complemental strand, 4957085 - 4956870
Alignment:
| Q |
18 |
tgttcaattgtttgaggtaatggcta-caaaaacaaagatctattttgttatggaatatgttcgtgggggtgagctttttaacaaggttgctaagggtag |
116 |
Q |
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| T |
4957085 |
tgttcaattgtttgaggtaatggctaacaaaaacaaagatctattttgttatggaatatgttcgtgggggtgagctttttaacaaggttgctaagggtag |
4956986 |
T |
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| Q |
117 |
gttgaaagaagaggttgctagaaagtattttcaacaattgatttctgctgttggattttgtcatgctagagg-tgtttatcatagggatcttaagcctga |
215 |
Q |
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| T |
4956985 |
gttgaaagaagaggttgctagaaagtattttcaacaattgatttctgctgttggattttgtcatgctagaggttgtttatcatagggatcttaagcctga |
4956886 |
T |
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| Q |
216 |
aaatttgttgcttgat |
231 |
Q |
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| T |
4956885 |
aaatttgttgcttgat |
4956870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 18 - 231
Target Start/End: Original strand, 35827819 - 35828032
Alignment:
| Q |
18 |
tgttcaattgtttgaggtaatggctacaaaaacaaagatctattttgttatggaatatgttcgtgggggtgagctttttaacaaggttgctaagggtagg |
117 |
Q |
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| T |
35827819 |
tgttcaactctttgaagtcatggctacaaagacaaagatttactttgtgatggaatatgtacgaggtggtgagcttttcaacaaggttgctaaaggtagg |
35827918 |
T |
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| Q |
118 |
ttgaaagaagaggttgctagaaagtattttcaacaattgatttctgctgttggattttgtcatgctagaggtgtttatcatagggatcttaagcctgaaa |
217 |
Q |
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| T |
35827919 |
ttgaaagaagaagttgcaaggaaatattttcagcagttaatatgtgctgttggattttgtcatgctagaggtgtttttcatagagatctaaagcctgaaa |
35828018 |
T |
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| Q |
218 |
atttgttgcttgat |
231 |
Q |
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| T |
35828019 |
atttgttgcttgat |
35828032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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