View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11519_high_10 (Length: 455)

Name: NF11519_high_10
Description: NF11519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11519_high_10
NF11519_high_10
[»] chr6 (5 HSPs)
chr6 (316-438)||(15966619-15966746)
chr6 (1-73)||(15966417-15966489)
chr6 (278-326)||(15966554-15966602)
chr6 (313-412)||(15518836-15518935)
chr6 (71-99)||(15966514-15966542)
[»] chr3 (1 HSPs)
chr3 (354-438)||(11998911-11999000)


Alignment Details
Target: chr6 (Bit Score: 100; Significance: 3e-49; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 316 - 438
Target Start/End: Original strand, 15966619 - 15966746
Alignment:
Q  316 atctttgacaatgagatttaaatcttttcctttgagttatgattacttatacatttgaaaacttgaaccaatgccattattaaagtttgagtaaat---- 411  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  15966619 atctttgctaatgagatttaaatcttttcctttgagttatgattacttatacatttgaaaacttgaaccaatgccattattaaagtttgagtaaattaca 15966718  T
Q  412 -tatcctcgcatgagaaatgctcatatt 438  Q
     |||||||||||||||||||||||||||    
T  15966719 ctatcctcgcatgagaaatgctcatatt 15966746  T

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Target: chr6; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 15966417 - 15966489
Alignment:
Q  1 aaagggacacttcacaaatgcatttaaggtatgttaccattgcaatgcatttactataaacacttcatggtca 73  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||    
T  15966417 aaagggccacttcacaaatgcatttaaggtatgttaccattgcaatgcatttactaaaaccacttcatggtca 15966489  T

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Target: chr6; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 278 - 326
Target Start/End: Original strand, 15966554 - 15966602
Alignment:
Q  278 gtgtacgtcacaagaagagatcattccatgtccctcaaatctttgacaa 326  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  15966554 gtgtacgtcacaagaagagatcattccatgtccctcaaatctttgacaa 15966602  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 313 - 412
Target Start/End: Original strand, 15518836 - 15518935
Alignment:
Q  313 caaatctttgacaatgagatttaaatcttttcctttgagttatgattacttatacatttgaaaacttgaaccaatgccattattaaagtttgagtaaatt 412  Q
    ||||||||||  ||||| |||||||||||||| |||||    ||||| |||| ||||||| |||||| |||||||| ||||| |||||||| ||||||||    
T  15518836 caaatctttgcaaatgaaatttaaatcttttcttttgaacagtgattccttaaacatttggaaactttaaccaatgtcattactaaagttttagtaaatt 15518935  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 99
Target Start/End: Original strand, 15966514 - 15966542
Alignment:
Q  71 tcacactgcaaggataggcatgtagaaat 99  Q
    |||||||||||||||||||||||||||||    
T  15966514 tcacactgcaaggataggcatgtagaaat 15966542  T

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Target: chr3 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 354 - 438
Target Start/End: Complemental strand, 11999000 - 11998911
Alignment:
Q  354 atgattacttatacatttgaaaacttgaaccaatgccattattaaagtttgagtaaatta-----tcctcgcatgagaaatgctcatatt 438  Q
    ||||||||||||||||||| |||||| |||||||||||| ||||||| ||||||||||||     |||||||||||||||||||||||||    
T  11999000 atgattacttatacatttggaaacttaaaccaatgccatcattaaagattgagtaaattacactctcctcgcatgagaaatgctcatatt 11998911  T

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