View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11519_high_11 (Length: 433)
Name: NF11519_high_11
Description: NF11519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11519_high_11 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 176; Significance: 1e-94; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 20 - 263
Target Start/End: Complemental strand, 40284814 - 40284572
Alignment:
| Q |
20 |
gcaagcttgatcaattgaagtatttttgtaaacatgcagatatacacagaacatgtgccaaagatagattgatatattcatcttatcttggtttatgcaa |
119 |
Q |
| |
|
||||||| ||||||||||||||||| || |||||||| ||||||||||||||| |||||||| |||||||||| |||||| ||||| ||||||||||||| |
|
|
| T |
40284814 |
gcaagctcgatcaattgaagtatttctgcaaacatgctgatatacacagaacaggtgccaaaaatagattgatttattcaacttattttggtttatgcaa |
40284715 |
T |
|
| Q |
120 |
acagctccaaccaaactcaccgttcctttcatagagtactacaaattcattatattttctgtgcatcccttttgtttttagaatttgtttgtttggtttg |
219 |
Q |
| |
|
||| |||||||||||| | | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40284714 |
acaactccaaccaaacaaatccttccttccatagagtactacaaattcattatattttctgtgcatcccttttgtttttagaatttgtttgtttggtttg |
40284615 |
T |
|
| Q |
220 |
atcttgaattcttgatctggatcagtatctctggacacttgata |
263 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40284614 |
atc-tgaattcttgatctggatcagtatctctggacacttgata |
40284572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 20 - 166
Target Start/End: Complemental strand, 40279853 - 40279707
Alignment:
| Q |
20 |
gcaagcttgatcaattgaagtatttttgtaaacatgcagatatacacagaacatgtgccaaagatagattgatatattcatcttatcttggtttatgcaa |
119 |
Q |
| |
|
|||| |||||||||||||||||||| || |||||||| ||||||||||||||| |||||||| |||||||||| |||||| ||||| ||||||||||||| |
|
|
| T |
40279853 |
gcaatcttgatcaattgaagtatttctgcaaacatgctgatatacacagaacaggtgccaaaaatagattgatttattcaacttattttggtttatgcaa |
40279754 |
T |
|
| Q |
120 |
acagctccaaccaaactcaccgttcctttcatagagtactacaaatt |
166 |
Q |
| |
|
|||||||||||||||| | || |||||| |||||||||||||||||| |
|
|
| T |
40279753 |
acagctccaaccaaacacgcccttccttccatagagtactacaaatt |
40279707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 20 - 166
Target Start/End: Original strand, 40458497 - 40458643
Alignment:
| Q |
20 |
gcaagcttgatcaattgaagtatttttgtaaacatgcagatatacacagaacatgtgccaaagatagattgatatattcatcttatcttggtttatgcaa |
119 |
Q |
| |
|
|||| |||||||||||||||||||| || |||||||| ||||||||||||||| |||||||| |||||||||| |||||| ||||| ||||||||||||| |
|
|
| T |
40458497 |
gcaatcttgatcaattgaagtatttctgcaaacatgctgatatacacagaacaggtgccaaaaatagattgatttattcaacttattttggtttatgcaa |
40458596 |
T |
|
| Q |
120 |
acagctccaaccaaactcaccgttcctttcatagagtactacaaatt |
166 |
Q |
| |
|
|||||||||||||||| | || |||||| |||||||||||||||||| |
|
|
| T |
40458597 |
acagctccaaccaaacacgcccttccttccatagagtactacaaatt |
40458643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 332 - 429
Target Start/End: Complemental strand, 40284542 - 40284445
Alignment:
| Q |
332 |
aattctttcatgcgtgctcgtatccatttttattctaatgaacattgttactttgattaatagagtacatctctcagtctcagtagttcatctcactc |
429 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||| || |||||| |
|
|
| T |
40284542 |
aattctttcatgcgtgctcgtgtccatttttattttaatgaacattgttactttgattaatatagtacatctctcagtcttagtagttgatatcactc |
40284445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University