View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11519_high_15 (Length: 409)
Name: NF11519_high_15
Description: NF11519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11519_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 19 - 254
Target Start/End: Original strand, 33681270 - 33681509
Alignment:
| Q |
19 |
accttgctgcctcatttgcaaagaaattgagtaggttgttgctttcagttccaccttctggtgcattggttattacatctccggttcacaatattttgcg |
118 |
Q |
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| T |
33681270 |
accttgctgcctcatttgcaaagaaattgagtaggctgttgctctcagttccaccttctggtgcattggttattacatctccggttcacaatattttgcg |
33681369 |
T |
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| Q |
119 |
tagacatccttcgatcaaactgtttggtgcaccgggta----aagatattctattttctatattttgtttttgcaattacttcaatagtaaaatttgttt |
214 |
Q |
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| T |
33681370 |
tagacatccttcgatcaaactgtttggtgcaccgggtaaattaagatattctattttctatattttgtttttgcaattacttcaatagtaaaatttgttt |
33681469 |
T |
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| Q |
215 |
cctggattactttatcattggaaatgttaatggagatcac |
254 |
Q |
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| T |
33681470 |
cctggattactttatcattggaaatgttaatggagatcac |
33681509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 19 - 230
Target Start/End: Original strand, 33666668 - 33666878
Alignment:
| Q |
19 |
accttgctgcctcatttgcaaagaaattgagtaggttgttgctttcagttccaccttctggtgcattggttattacatctccggttcacaatattttgcg |
118 |
Q |
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| T |
33666668 |
acctggctgcctcatttgcaaagaaattgagtaggctgttgctttcagttccaccttctggtgcattggttattacatctctggttcacaatattttgcg |
33666767 |
T |
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| Q |
119 |
tagacatccttcgatcaaactgtttggtgcaccgggtaaagatattctattttctatattttgtttttgcaattacttcaatagtaaaatttgtttcctg |
218 |
Q |
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| T |
33666768 |
tagacatccttcgatc-aactgtttggtgcatcgggtaaagatagtcttgtgtctatattttgtttttgcaatcacttcattagtaaattttgtttcctg |
33666866 |
T |
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| Q |
219 |
gattactttatc |
230 |
Q |
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| T |
33666867 |
gattactatatc |
33666878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 251 - 340
Target Start/End: Original strand, 33681571 - 33681660
Alignment:
| Q |
251 |
tcactataaacttttccatttagaaaatgatatatgttgtgttgaggaaatacttttcaattcatcttatatttagaattattgcagttt |
340 |
Q |
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| T |
33681571 |
tcactataaacttttccatttagaaaatgatatatgttgtgttgaggaaatacttttcaattcatcttatatttagaattattgcagttt |
33681660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 340 - 405
Target Start/End: Original strand, 33681703 - 33681768
Alignment:
| Q |
340 |
ttaaatagttgcatacttgcgtgtttgtgtattttgaattgtttccatattgtacctatgcttctc |
405 |
Q |
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| T |
33681703 |
ttaaatagttgcatacttgcgtgtttgtgtattttgaattgtttccattttgtatctatgtttctc |
33681768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 257 - 320
Target Start/End: Original strand, 33666966 - 33667029
Alignment:
| Q |
257 |
taaacttttccatttagaaaatgatatatgttgtgttgaggaaatacttttcaattcatcttat |
320 |
Q |
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| T |
33666966 |
taaacttttccatttagaaaatgatctatgctgtgttcaggaaatacttttctattcatcttat |
33667029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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