View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11519_high_19 (Length: 387)
Name: NF11519_high_19
Description: NF11519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11519_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 18 - 374
Target Start/End: Complemental strand, 39308490 - 39308138
Alignment:
| Q |
18 |
attaacaaataacaatcataaagccatgtctgctaaagccatgattgaccacaatagcttggcatagctcaaaaagggacaattaa-ttaatcaagttga |
116 |
Q |
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| T |
39308490 |
attaacaaataacaatcataaagccatgtctgctaaagccatgattgaccacaatagcttggcatagctcaaaaagggataattaaattaatcaagttga |
39308391 |
T |
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| Q |
117 |
atgattgaaacgaaaccggtccggatcaacaaaaaatcagacatgacttgcaaatcaaggttaatagtagtttataaacatcccgtctccccaacctatt |
216 |
Q |
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| T |
39308390 |
atgattgaaac-----cggtccggatcaacaaaaaatcagacatgacttgcaaatcaaggttaatagtagtttataaacatcccgtctccccaacctatt |
39308296 |
T |
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| Q |
217 |
cacacgccttttaacgacaaagccac-gaggacacactcaagatccaaagcgaacaatacctcagnnnnnnnnnntgcagcggacatgacttctaaacga |
315 |
Q |
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| T |
39308295 |
cacacgccttttaacgacaaagtcacagaggacacactcaagatccaaagcgaacaatacctcag-aaaaaaaaatgcagcggacatgacttctaaacga |
39308197 |
T |
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| Q |
316 |
aaacatcaacaaggtcattttgattgaaaaaagaaaatactaagctcttgacctatgct |
374 |
Q |
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| T |
39308196 |
aaacatcaacaaggtcattttgattgaaaaaagaaaatactaagctcttgaccaatgct |
39308138 |
T |
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