View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11519_high_2 (Length: 553)
Name: NF11519_high_2
Description: NF11519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11519_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 489; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 19 - 543
Target Start/End: Complemental strand, 14998570 - 14998046
Alignment:
| Q |
19 |
gtcaaagccatatcgatcttagacagctggaacaagaaaagttaaatgcgcaaattaaccgtctgaaatacttcttctgaataacacacatcgttagatt |
118 |
Q |
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|||||||||||||| |||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
14998570 |
gtcaaagccatatcaatcttagacagctggaacaacaaaagttaaacgtgcaaattaaccgtctgaaatacttcttctgaataacacacatcattagatt |
14998471 |
T |
|
| Q |
119 |
ttaaacacaactctgccaaaaaataatgaactaacctcagtgcctaattctctagtcatattggcataagctgcttcttgagcttgtgcttcttccttgg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14998470 |
ttaaacacaactctgccaaaaaataatgaactaacctcagtgcctaattctctagtcatattggcataagctgcttcttgagcttgtgcttcttccttgg |
14998371 |
T |
|
| Q |
219 |
agagttcactctcctgaaatattggcataagttaatgtagctacagaaaaatattgcataggatggctgaaaccactgttatttctttaatttcaacctc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
14998370 |
agagttcactctcctgaaatattggcataagttaatgtagctacagaaaaatattgcataggatggctgaaaccactgttatttctttaattgcaacctc |
14998271 |
T |
|
| Q |
319 |
tagaattgtacataagcaagtttcgttcatccaaaagaaaggaaagtattttcgaaaaacacaaattaccgccttagcaactttaggcaaaagatgcagc |
418 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14998270 |
tagaattgtacataagcaagtttcattcatccaaaagaaaggaaagtattttccaaaaacacaaattaccgccttagcaactttaggcaaaagatgcagc |
14998171 |
T |
|
| Q |
419 |
catttcttctcaactttttccagcaaggtcttagccatcacatggacatcatggctttcatggttgtatttcattgcattatgaaaaatcagccttacgt |
518 |
Q |
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| T |
14998170 |
catttcttctcaactttttccagcaaggtcttagccatcacatggacatcatggctttcatggttgtatttcattgcattatgaaatatcagccttacgt |
14998071 |
T |
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| Q |
519 |
cagcatatatctccctcacgttctt |
543 |
Q |
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| T |
14998070 |
cagcatatatctccctcacgttctt |
14998046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 118 - 201
Target Start/End: Original strand, 14735090 - 14735176
Alignment:
| Q |
118 |
tttaaacacaactctgccaaa---aaataatgaactaacctcagtgcctaattctctagtcatattggcataagctgcttcttgagc |
201 |
Q |
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||||||||||||||||| ||| |||| |||||| ||||||||| | ||||||||||||| | || ||||||| |||||| |||| |
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| T |
14735090 |
tttaaacacaactctgcaaaacaaaaatgatgaaccaacctcagtacttaattctctagtcttgtttgcataagtggcttctagagc |
14735176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 20 - 543
Target Start/End: Complemental strand, 29467417 - 29466867
Alignment:
| Q |
20 |
tcaaagccatatcgatcttagacagctggaacaagaaaagttaaatgcgcaaattaaccgtctgaaatacttcttctgaataacacacatcgttagattt |
119 |
Q |
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||||||||||||| | |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| | ||||| ||||| |||||||| |
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| T |
29467417 |
tcaaagccatatcaaccttagacagctggaacaacaaaagttaaatgcacaaattaaccgtctgaaatacttcttccaagtaacatacatcattagattt |
29467318 |
T |
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| Q |
120 |
taaacacaactctgccaaaaaataatgaactaacctcagtgcctaattctctagtcatattggcataagctgcttcttgagct----------------- |
202 |
Q |
| |
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|||||||| ||||| |||||||||||||| ||||||||||| |||||| ||||||||||||||||||| |||||||||||| |
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| T |
29467317 |
taaacacagctctgaaaaaaaataatgaaccaacctcagtgcttaattccctagtcatattggcataagttgcttcttgagcaagccttttattcaattc |
29467218 |
T |
|
| Q |
203 |
----tgtgcttcttccttggagagttcactctcctgaaatattggcataa-----gttaatgtagctacagaaaaatattgcataggatggctgaaacca |
293 |
Q |
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|||||||||||||| || || |||||||||||||||| | |||| |||||| ||| |||||||||||||||||||||||||||||||||| |
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| T |
29467217 |
ctcatgtgcttcttcctttgataggtcactctcctgaaataatcaaataaagcaagttaatatagttacagaaaaatattgcataggatggctgaaacca |
29467118 |
T |
|
| Q |
294 |
ctgttatttctttaatttcaacctctagaattgtacataagcaagtttcgttcatccaaaagaaaggaaagtattttcgaaaaaca-caaattaccgcct |
392 |
Q |
| |
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||||||||||| ||| | ||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||| ||||| | ||||||||||||| |
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| T |
29467117 |
ctgttatttctataagtgcaacctctagaattgtacataagcaagtttcattcatcaaaaacaaaggaaagtatttggaaaaaaaaacaaattaccgcct |
29467018 |
T |
|
| Q |
393 |
tagcaactttaggcaaaagatgcagccatttcttctcaactttttccagcaaggtcttagccatcacatggacatcatggctttcatggttgtatttcat |
492 |
Q |
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|||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||| |
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| T |
29467017 |
tagcaactttaggcaaaaaatgcagccattacttctcaaatttttccagcaaggtcttagccatcacatggacatcattcttttcatcattgtacttcat |
29466918 |
T |
|
| Q |
493 |
tgcattatgaaaaatcagccttacgtcagcatatatctccctcacgttctt |
543 |
Q |
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|||||| | ||||||||||||||| |||||||||||||||||||||||||| |
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| T |
29466917 |
tgcattcttaaaaatcagccttacatcagcatatatctccctcacgttctt |
29466867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 372 - 533
Target Start/End: Original strand, 32191951 - 32192111
Alignment:
| Q |
372 |
gaaaaacacaaattaccgccttagcaactttaggcaaaagatgcagccatttcttctcaactttttccagcaaggtcttagccatcacatggacatcatg |
471 |
Q |
| |
|
|||||||| |||| ||||||||||||||| |||| ||||| ||||| ||||| ||||||| ||||| | | | || || |||||||||||||||| || |
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| T |
32191951 |
gaaaaaca-aaataaccgccttagcaactgtaggtaaaaggtgcagtcatttattctcaaatttttgtaacgaagtttttgccatcacatggacataatt |
32192049 |
T |
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| Q |
472 |
gctttcatggttgtatttcattgcattatgaaaaatcagccttacgtcagcatatatctccc |
533 |
Q |
| |
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|||||| ||| || ||||||||||| | ||| ||||||||||| ||| |||||||||||| |
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| T |
32192050 |
tatttcattgttatacttcattgcattcttaaatatcagccttacatcaacatatatctccc |
32192111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 347 - 440
Target Start/End: Complemental strand, 32191598 - 32191506
Alignment:
| Q |
347 |
atccaaaagaaaggaaagtattttcgaaaaacacaaattaccgccttagcaactttaggcaaaagatgcagccatttcttctcaactttttcca |
440 |
Q |
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||||||||||||||||| || ||| | |||||| ||| || ||||| | |||||||||||| |||||||||| |||| ||||||| |||||||| |
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| T |
32191598 |
atccaaaagaaaggaaaataatttgggaaaacaaaaaatatcgcctaa-caactttaggcagaagatgcagctatttattctcaaatttttcca |
32191506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 247 - 290
Target Start/End: Complemental strand, 32191650 - 32191607
Alignment:
| Q |
247 |
aagttaatgtagctacagaaaaatattgcataggatggctgaaa |
290 |
Q |
| |
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|||| ||||||||||||||||||||||||||| |||| |||||| |
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| T |
32191650 |
aagtcaatgtagctacagaaaaatattgcatacgatgactgaaa |
32191607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 414 - 498
Target Start/End: Complemental strand, 29872799 - 29872715
Alignment:
| Q |
414 |
gcagccatttcttctcaactttttccagcaaggtcttagccatcacatggacatcatggctttcatggttgtatttcattgcatt |
498 |
Q |
| |
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|||||||||| | |||| |||||||| ||||||||| ||||| |||||||||||||| |||||| |||||| ||||| ||||| |
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| T |
29872799 |
gcagccatttatcttcaaatttttccatcaaggtctttgccattacatggacatcatgtttttcattgttgtacttcatggcatt |
29872715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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