View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11519_high_21 (Length: 374)
Name: NF11519_high_21
Description: NF11519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11519_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 43171057 - 43171410
Alignment:
| Q |
1 |
catatagagattgtgataaatcattagttataaaaacctagctgtataactatttcaacgatgnnnnnnnn-caacaatgttacccctgattcgcaaata |
99 |
Q |
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| T |
43171057 |
catatagagattgtgataaatcattagttataaaaacctagctgtataactatttcaacgatgtttttttttcaacaatgttacccctgattcgcaaata |
43171156 |
T |
|
| Q |
100 |
tcctaaatttccattgnnnnnnn-tatagaaagaggaaaatagtaaaaccaattggaaggaaatgaaagctgattctaatatattagcaagaggcagcag |
198 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
43171157 |
tcctaaatttccattgaaaaaaaatatagaaagaggaaaatagtaaaaccaattggaaggaaatgaaagctgattctaatatattagtaagaggcagcag |
43171256 |
T |
|
| Q |
199 |
caataattgcacccaggatggacccaaaactgatggttcaactcgtcgtgagtccagcatcacgctgcatggtggaaacgccacaagctggcaaaaatga |
298 |
Q |
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||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43171257 |
caacaattgcacccagtatggacccaaac-------ttcaactcgtcgtgagtccagcatcacgctgcatggtggaaacgccacaagctggcaaaaatga |
43171349 |
T |
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| Q |
299 |
cagttcaactcgtgaatccagcgtcatgctgtatggtggaaacaccaaagccatgtttcat |
359 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
43171350 |
cagttcaactcgtgaatccagcgtcatgctgtacggtggaaacaccaaagccatgtttcat |
43171410 |
T |
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