View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11519_high_39 (Length: 252)
Name: NF11519_high_39
Description: NF11519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11519_high_39 |
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Alignment Details
Target: chr7 (Bit Score: 119; Significance: 7e-61; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 16 - 158
Target Start/End: Complemental strand, 36605896 - 36605754
Alignment:
| Q |
16 |
tgaatctcaatcaaatagtggaacatcattttgattctacaatctattagttttcattcctcaaattttcccccatttgcctatattaatttactctatt |
115 |
Q |
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| T |
36605896 |
tgaatctcaatcaaatagtaaaacatcattttgattctacaatctattagttttcattcctcaaattttcccccatttgcctatattaatttactctatt |
36605797 |
T |
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| Q |
116 |
caattcccaatatatatgtattttaactacctatattaacatg |
158 |
Q |
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| T |
36605796 |
caatttacagtatatatgtattttaactacctacattaacatg |
36605754 |
T |
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Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 122
Target Start/End: Original strand, 32649640 - 32649746
Alignment:
| Q |
16 |
tgaatctcaatcaaatagtggaacatcattttgattctacaatctattagttttcattcctcaaa-ttttcccccatttgcctatattaatttactctat |
114 |
Q |
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||||| ||||||||| || ||||||| ||||| |||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||| | |
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| T |
32649640 |
tgaatgtcaatcaaacag-ggaacataattttcattctataatctattagttttcattcctcaaatttttcccacatttgcctatattaattaactctct |
32649738 |
T |
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| Q |
115 |
tcaattcc |
122 |
Q |
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|| ||||| |
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| T |
32649739 |
tccattcc |
32649746 |
T |
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